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Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq
BACKGROUND: Salt-sensitive hypertension (SSH) is a common type of essential hypertension in China. In recent years, although an increasing number of researches have focused on SSH, few studies have been researched on patients with SSH. The objective of this study was to explore the genes and pathway...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399395/ https://www.ncbi.nlm.nih.gov/pubmed/36035920 http://dx.doi.org/10.3389/fcvm.2022.963744 |
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author | Chao, Xiaoying Jiang, Zhiyuan Zhong, Guoqiang Huang, Rongjie |
author_facet | Chao, Xiaoying Jiang, Zhiyuan Zhong, Guoqiang Huang, Rongjie |
author_sort | Chao, Xiaoying |
collection | PubMed |
description | BACKGROUND: Salt-sensitive hypertension (SSH) is a common type of essential hypertension in China. In recent years, although an increasing number of researches have focused on SSH, few studies have been researched on patients with SSH. The objective of this study was to explore the genes and pathways linked with SSH using RNA-sequencing (RNA-seq). MATERIALS AND METHODS: We used RNA-seq to analyze the transcriptome of peripheral blood mononuclear cells (PBMCs) of five SSH patients and five SRH patients. Next, we analyzed the differentially expressed genes (DEGs) using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, and Gene Set Enrichment (GSEA) enrichment analysis. Then, Cytoscape was used to construct the protein-protein interaction (PPI) network and the hub genes. Finally, CMAP analysis found that several small molecular compounds could reverse the altered DEGs. RESULTS: A total of 431 DEGs were found in the PBMC samples, including 294 up-regulated and 137 down-regulated genes. Functional enrichment analysis found significant enrichment in immune-related associations such as inflammation, chemokine, and cytokine-cytokine receptor interaction. The hub genes of the two modules were IL-6, IL-1A, CCL2, CCL3L3, and BUB1. In addition, we identified two small molecular compounds (iopromide and iloprost) that potentially interacted with DEGs. CONCLUSION: This study suggests some potential biomarkers for the diagnosis of SSH. It provides new insights into SSH diagnosis and possible future clinical treatment. |
format | Online Article Text |
id | pubmed-9399395 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93993952022-08-25 Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq Chao, Xiaoying Jiang, Zhiyuan Zhong, Guoqiang Huang, Rongjie Front Cardiovasc Med Cardiovascular Medicine BACKGROUND: Salt-sensitive hypertension (SSH) is a common type of essential hypertension in China. In recent years, although an increasing number of researches have focused on SSH, few studies have been researched on patients with SSH. The objective of this study was to explore the genes and pathways linked with SSH using RNA-sequencing (RNA-seq). MATERIALS AND METHODS: We used RNA-seq to analyze the transcriptome of peripheral blood mononuclear cells (PBMCs) of five SSH patients and five SRH patients. Next, we analyzed the differentially expressed genes (DEGs) using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, and Gene Set Enrichment (GSEA) enrichment analysis. Then, Cytoscape was used to construct the protein-protein interaction (PPI) network and the hub genes. Finally, CMAP analysis found that several small molecular compounds could reverse the altered DEGs. RESULTS: A total of 431 DEGs were found in the PBMC samples, including 294 up-regulated and 137 down-regulated genes. Functional enrichment analysis found significant enrichment in immune-related associations such as inflammation, chemokine, and cytokine-cytokine receptor interaction. The hub genes of the two modules were IL-6, IL-1A, CCL2, CCL3L3, and BUB1. In addition, we identified two small molecular compounds (iopromide and iloprost) that potentially interacted with DEGs. CONCLUSION: This study suggests some potential biomarkers for the diagnosis of SSH. It provides new insights into SSH diagnosis and possible future clinical treatment. Frontiers Media S.A. 2022-08-10 /pmc/articles/PMC9399395/ /pubmed/36035920 http://dx.doi.org/10.3389/fcvm.2022.963744 Text en Copyright © 2022 Chao, Jiang, Zhong and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Chao, Xiaoying Jiang, Zhiyuan Zhong, Guoqiang Huang, Rongjie Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title | Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title_full | Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title_fullStr | Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title_full_unstemmed | Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title_short | Identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using RNA-seq |
title_sort | identification of biomarkers, pathways and potential therapeutic agents for salt-sensitive hypertension using rna-seq |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399395/ https://www.ncbi.nlm.nih.gov/pubmed/36035920 http://dx.doi.org/10.3389/fcvm.2022.963744 |
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