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Occam’s razor gets a new edge: the use of symmetries in model selection

We demonstrate the power of using symmetries for model selection in the context of mechanistic modelling. We analyse two different models called the power law model (PLM) and the immunological model (IM) describing the increase in cancer risk with age, due to mutation accumulation or immunosenescenc...

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Detalles Bibliográficos
Autores principales: Borgqvist, Johannes G., Palmer, Sam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399699/
https://www.ncbi.nlm.nih.gov/pubmed/36000228
http://dx.doi.org/10.1098/rsif.2022.0324
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author Borgqvist, Johannes G.
Palmer, Sam
author_facet Borgqvist, Johannes G.
Palmer, Sam
author_sort Borgqvist, Johannes G.
collection PubMed
description We demonstrate the power of using symmetries for model selection in the context of mechanistic modelling. We analyse two different models called the power law model (PLM) and the immunological model (IM) describing the increase in cancer risk with age, due to mutation accumulation or immunosenescence, respectively. The IM fits several cancer types better than the PLM implying that it would be selected based on minimizing residuals. However, recently a symmetry-based method for model selection has been developed, which has been successfully used in an in silico setting to find the correct model when traditional model fitting has failed. Here, we apply this method in a real-world setting to investigate the mechanisms of carcinogenesis. First, we derive distinct symmetry transformations of the two models and then we select the model which not only fits the original data but is also invariant under transformations by its symmetry. Contrary to the initial conclusion, we conclude that the PLM realistically describes the mechanism underlying the colon cancer dataset. These conclusions agree with experimental knowledge, and this work demonstrates how a model selection criterion based on biological properties can be implemented using symmetries.
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spelling pubmed-93996992022-08-24 Occam’s razor gets a new edge: the use of symmetries in model selection Borgqvist, Johannes G. Palmer, Sam J R Soc Interface Life Sciences–Mathematics interface We demonstrate the power of using symmetries for model selection in the context of mechanistic modelling. We analyse two different models called the power law model (PLM) and the immunological model (IM) describing the increase in cancer risk with age, due to mutation accumulation or immunosenescence, respectively. The IM fits several cancer types better than the PLM implying that it would be selected based on minimizing residuals. However, recently a symmetry-based method for model selection has been developed, which has been successfully used in an in silico setting to find the correct model when traditional model fitting has failed. Here, we apply this method in a real-world setting to investigate the mechanisms of carcinogenesis. First, we derive distinct symmetry transformations of the two models and then we select the model which not only fits the original data but is also invariant under transformations by its symmetry. Contrary to the initial conclusion, we conclude that the PLM realistically describes the mechanism underlying the colon cancer dataset. These conclusions agree with experimental knowledge, and this work demonstrates how a model selection criterion based on biological properties can be implemented using symmetries. The Royal Society 2022-08-24 /pmc/articles/PMC9399699/ /pubmed/36000228 http://dx.doi.org/10.1098/rsif.2022.0324 Text en © 2022 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Borgqvist, Johannes G.
Palmer, Sam
Occam’s razor gets a new edge: the use of symmetries in model selection
title Occam’s razor gets a new edge: the use of symmetries in model selection
title_full Occam’s razor gets a new edge: the use of symmetries in model selection
title_fullStr Occam’s razor gets a new edge: the use of symmetries in model selection
title_full_unstemmed Occam’s razor gets a new edge: the use of symmetries in model selection
title_short Occam’s razor gets a new edge: the use of symmetries in model selection
title_sort occam’s razor gets a new edge: the use of symmetries in model selection
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399699/
https://www.ncbi.nlm.nih.gov/pubmed/36000228
http://dx.doi.org/10.1098/rsif.2022.0324
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