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Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission

We propose a parsimonious, yet effective, susceptible–exposed–infected–removed-type model that incorporates the time change in the transmission and death rates. The model is calibrated by Tikhonov-type regularization from official reports from New York City (NYC), Chicago, the State of São Paulo, in...

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Autores principales: Albani, V. V. L., Albani, R. A. S., Massad, E., Zubelli, J. P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399708/
https://www.ncbi.nlm.nih.gov/pubmed/36016918
http://dx.doi.org/10.1098/rsos.220489
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author Albani, V. V. L.
Albani, R. A. S.
Massad, E.
Zubelli, J. P.
author_facet Albani, V. V. L.
Albani, R. A. S.
Massad, E.
Zubelli, J. P.
author_sort Albani, V. V. L.
collection PubMed
description We propose a parsimonious, yet effective, susceptible–exposed–infected–removed-type model that incorporates the time change in the transmission and death rates. The model is calibrated by Tikhonov-type regularization from official reports from New York City (NYC), Chicago, the State of São Paulo, in Brazil and British Columbia, in Canada. To forecast, we propose different ways to extend the transmission parameter, considering its estimated values. The forecast accuracy is then evaluated using real data from the above referred places. All the techniques accurately provided forecast scenarios for periods 15 days long. One of the models effectively predicted the magnitude of the four waves of infections in NYC, including the one caused by the Omicron variant for periods of 45 days using out-of-sample data.
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spelling pubmed-93997082022-08-24 Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission Albani, V. V. L. Albani, R. A. S. Massad, E. Zubelli, J. P. R Soc Open Sci Mathematics We propose a parsimonious, yet effective, susceptible–exposed–infected–removed-type model that incorporates the time change in the transmission and death rates. The model is calibrated by Tikhonov-type regularization from official reports from New York City (NYC), Chicago, the State of São Paulo, in Brazil and British Columbia, in Canada. To forecast, we propose different ways to extend the transmission parameter, considering its estimated values. The forecast accuracy is then evaluated using real data from the above referred places. All the techniques accurately provided forecast scenarios for periods 15 days long. One of the models effectively predicted the magnitude of the four waves of infections in NYC, including the one caused by the Omicron variant for periods of 45 days using out-of-sample data. The Royal Society 2022-08-24 /pmc/articles/PMC9399708/ /pubmed/36016918 http://dx.doi.org/10.1098/rsos.220489 Text en © 2022 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Mathematics
Albani, V. V. L.
Albani, R. A. S.
Massad, E.
Zubelli, J. P.
Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title_full Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title_fullStr Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title_full_unstemmed Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title_short Nowcasting and forecasting COVID-19 waves: the recursive and stochastic nature of transmission
title_sort nowcasting and forecasting covid-19 waves: the recursive and stochastic nature of transmission
topic Mathematics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399708/
https://www.ncbi.nlm.nih.gov/pubmed/36016918
http://dx.doi.org/10.1098/rsos.220489
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