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On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride
A key requisite to characterizing GaN precipitation from ammonia solution from molecular simulations is the availability of reliable molecular mechanics models for the interactions of gallium ions with NH(3), NH(2) (−), and NH(2−) species, respectively. Here, we present a tailor‐made force field whi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9400881/ https://www.ncbi.nlm.nih.gov/pubmed/35588269 http://dx.doi.org/10.1002/cphc.202200117 |
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author | Wonglakhon, Tanakorn Zahn, Dirk |
author_facet | Wonglakhon, Tanakorn Zahn, Dirk |
author_sort | Wonglakhon, Tanakorn |
collection | PubMed |
description | A key requisite to characterizing GaN precipitation from ammonia solution from molecular simulations is the availability of reliable molecular mechanics models for the interactions of gallium ions with NH(3), NH(2) (−), and NH(2−) species, respectively. Here, we present a tailor‐made force field which is fully compatible to an earlier developed GaN model, thus bridging the analyses of Ga(3+) ions in ammonia solution with the aggregation of [Ga(x)(NH)(y)(NH(2))(z)](+3x−2y−z) precursors and the modelling of GaN crystals. For this, quantum mechanical characterization of a series of Ga‐coordination clusters is used for parameterization and benchmarking the generalized amber force field (GAFF2) and tailor‐made refinements needed to achieve good agreement of both structural features and formation energy, respectively. The perspectives of our models for larger scale molecular dynamics simulations are demonstrated by the analyses of amide and imide defects arrangement during the growth of GaN crystal faces. |
format | Online Article Text |
id | pubmed-9400881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94008812022-08-26 On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride Wonglakhon, Tanakorn Zahn, Dirk Chemphyschem Research Articles A key requisite to characterizing GaN precipitation from ammonia solution from molecular simulations is the availability of reliable molecular mechanics models for the interactions of gallium ions with NH(3), NH(2) (−), and NH(2−) species, respectively. Here, we present a tailor‐made force field which is fully compatible to an earlier developed GaN model, thus bridging the analyses of Ga(3+) ions in ammonia solution with the aggregation of [Ga(x)(NH)(y)(NH(2))(z)](+3x−2y−z) precursors and the modelling of GaN crystals. For this, quantum mechanical characterization of a series of Ga‐coordination clusters is used for parameterization and benchmarking the generalized amber force field (GAFF2) and tailor‐made refinements needed to achieve good agreement of both structural features and formation energy, respectively. The perspectives of our models for larger scale molecular dynamics simulations are demonstrated by the analyses of amide and imide defects arrangement during the growth of GaN crystal faces. John Wiley and Sons Inc. 2022-05-19 2022-07-05 /pmc/articles/PMC9400881/ /pubmed/35588269 http://dx.doi.org/10.1002/cphc.202200117 Text en © 2022 The Authors. ChemPhysChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Wonglakhon, Tanakorn Zahn, Dirk On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title | On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title_full | On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title_fullStr | On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title_full_unstemmed | On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title_short | On the Role of Amides and Imides for Understanding GaN Syntheses from Ammonia Solution: Molecular Mechanics Models of Ammonia, Amide and Imide Interactions with Gallium Nitride |
title_sort | on the role of amides and imides for understanding gan syntheses from ammonia solution: molecular mechanics models of ammonia, amide and imide interactions with gallium nitride |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9400881/ https://www.ncbi.nlm.nih.gov/pubmed/35588269 http://dx.doi.org/10.1002/cphc.202200117 |
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