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Development and validation of a deep learning-based protein electrophoresis classification algorithm

BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the...

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Autores principales: Lee, Nuri, Jeong, Seri, Jeon, Kibum, Song, Wonkeun, Park, Min-Jeong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401151/
https://www.ncbi.nlm.nih.gov/pubmed/36001575
http://dx.doi.org/10.1371/journal.pone.0273284
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author Lee, Nuri
Jeong, Seri
Jeon, Kibum
Song, Wonkeun
Park, Min-Jeong
author_facet Lee, Nuri
Jeong, Seri
Jeon, Kibum
Song, Wonkeun
Park, Min-Jeong
author_sort Lee, Nuri
collection PubMed
description BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the labor-intensive PEP interpretation and enhance inter-observer reliability. METHODS: A total of 2,578 gel images and densitogram PEP images from January 2018 to July 2019 were split into training (80%), validation (10%), and test (10.0%) sets. The PEP images were assessed based on six major findings (acute-phase protein, monoclonal gammopathy, polyclonal gammopathy, hypoproteinemia, nephrotic syndrome, and normal). The images underwent processing, including color-to-grayscale and histogram equalization, and were input into neural networks. RESULTS: Using densitogram PEP images, the area under the receiver operating characteristic curve (AUROC) for each diagnosis ranged from 0.873 to 0.989, and the accuracy for classifying all the findings ranged from 85.2% to 96.9%. For gel images, the AUROC ranged from 0.763 to 0.965, and the accuracy ranged from 82.0% to 94.5%. CONCLUSIONS: The deep learning algorithm demonstrated good performance in classifying PEP images. It is expected to be useful as an auxiliary tool for screening the results and helpful in environments where specialists are scarce.
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spelling pubmed-94011512022-08-25 Development and validation of a deep learning-based protein electrophoresis classification algorithm Lee, Nuri Jeong, Seri Jeon, Kibum Song, Wonkeun Park, Min-Jeong PLoS One Research Article BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the labor-intensive PEP interpretation and enhance inter-observer reliability. METHODS: A total of 2,578 gel images and densitogram PEP images from January 2018 to July 2019 were split into training (80%), validation (10%), and test (10.0%) sets. The PEP images were assessed based on six major findings (acute-phase protein, monoclonal gammopathy, polyclonal gammopathy, hypoproteinemia, nephrotic syndrome, and normal). The images underwent processing, including color-to-grayscale and histogram equalization, and were input into neural networks. RESULTS: Using densitogram PEP images, the area under the receiver operating characteristic curve (AUROC) for each diagnosis ranged from 0.873 to 0.989, and the accuracy for classifying all the findings ranged from 85.2% to 96.9%. For gel images, the AUROC ranged from 0.763 to 0.965, and the accuracy ranged from 82.0% to 94.5%. CONCLUSIONS: The deep learning algorithm demonstrated good performance in classifying PEP images. It is expected to be useful as an auxiliary tool for screening the results and helpful in environments where specialists are scarce. Public Library of Science 2022-08-24 /pmc/articles/PMC9401151/ /pubmed/36001575 http://dx.doi.org/10.1371/journal.pone.0273284 Text en © 2022 Lee et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lee, Nuri
Jeong, Seri
Jeon, Kibum
Song, Wonkeun
Park, Min-Jeong
Development and validation of a deep learning-based protein electrophoresis classification algorithm
title Development and validation of a deep learning-based protein electrophoresis classification algorithm
title_full Development and validation of a deep learning-based protein electrophoresis classification algorithm
title_fullStr Development and validation of a deep learning-based protein electrophoresis classification algorithm
title_full_unstemmed Development and validation of a deep learning-based protein electrophoresis classification algorithm
title_short Development and validation of a deep learning-based protein electrophoresis classification algorithm
title_sort development and validation of a deep learning-based protein electrophoresis classification algorithm
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401151/
https://www.ncbi.nlm.nih.gov/pubmed/36001575
http://dx.doi.org/10.1371/journal.pone.0273284
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