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Development and validation of a deep learning-based protein electrophoresis classification algorithm
BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401151/ https://www.ncbi.nlm.nih.gov/pubmed/36001575 http://dx.doi.org/10.1371/journal.pone.0273284 |
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author | Lee, Nuri Jeong, Seri Jeon, Kibum Song, Wonkeun Park, Min-Jeong |
author_facet | Lee, Nuri Jeong, Seri Jeon, Kibum Song, Wonkeun Park, Min-Jeong |
author_sort | Lee, Nuri |
collection | PubMed |
description | BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the labor-intensive PEP interpretation and enhance inter-observer reliability. METHODS: A total of 2,578 gel images and densitogram PEP images from January 2018 to July 2019 were split into training (80%), validation (10%), and test (10.0%) sets. The PEP images were assessed based on six major findings (acute-phase protein, monoclonal gammopathy, polyclonal gammopathy, hypoproteinemia, nephrotic syndrome, and normal). The images underwent processing, including color-to-grayscale and histogram equalization, and were input into neural networks. RESULTS: Using densitogram PEP images, the area under the receiver operating characteristic curve (AUROC) for each diagnosis ranged from 0.873 to 0.989, and the accuracy for classifying all the findings ranged from 85.2% to 96.9%. For gel images, the AUROC ranged from 0.763 to 0.965, and the accuracy ranged from 82.0% to 94.5%. CONCLUSIONS: The deep learning algorithm demonstrated good performance in classifying PEP images. It is expected to be useful as an auxiliary tool for screening the results and helpful in environments where specialists are scarce. |
format | Online Article Text |
id | pubmed-9401151 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-94011512022-08-25 Development and validation of a deep learning-based protein electrophoresis classification algorithm Lee, Nuri Jeong, Seri Jeon, Kibum Song, Wonkeun Park, Min-Jeong PLoS One Research Article BACKGROUND: Protein electrophoresis (PEP) is an important tool in supporting the analytical characterization of protein status in diseases related to monoclonal components, inflammation, and antibody deficiency. Here, we developed a deep learning-based PEP classification algorithm to supplement the labor-intensive PEP interpretation and enhance inter-observer reliability. METHODS: A total of 2,578 gel images and densitogram PEP images from January 2018 to July 2019 were split into training (80%), validation (10%), and test (10.0%) sets. The PEP images were assessed based on six major findings (acute-phase protein, monoclonal gammopathy, polyclonal gammopathy, hypoproteinemia, nephrotic syndrome, and normal). The images underwent processing, including color-to-grayscale and histogram equalization, and were input into neural networks. RESULTS: Using densitogram PEP images, the area under the receiver operating characteristic curve (AUROC) for each diagnosis ranged from 0.873 to 0.989, and the accuracy for classifying all the findings ranged from 85.2% to 96.9%. For gel images, the AUROC ranged from 0.763 to 0.965, and the accuracy ranged from 82.0% to 94.5%. CONCLUSIONS: The deep learning algorithm demonstrated good performance in classifying PEP images. It is expected to be useful as an auxiliary tool for screening the results and helpful in environments where specialists are scarce. Public Library of Science 2022-08-24 /pmc/articles/PMC9401151/ /pubmed/36001575 http://dx.doi.org/10.1371/journal.pone.0273284 Text en © 2022 Lee et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lee, Nuri Jeong, Seri Jeon, Kibum Song, Wonkeun Park, Min-Jeong Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title | Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title_full | Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title_fullStr | Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title_full_unstemmed | Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title_short | Development and validation of a deep learning-based protein electrophoresis classification algorithm |
title_sort | development and validation of a deep learning-based protein electrophoresis classification algorithm |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401151/ https://www.ncbi.nlm.nih.gov/pubmed/36001575 http://dx.doi.org/10.1371/journal.pone.0273284 |
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