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Versatile Vibrational Energy Sensors for Proteins

Vibrational energy transfer (VET) is emerging as key mechanism for protein functions, possibly playing an important role for energy dissipation, allosteric regulation, and enzyme catalysis. A deep understanding of VET is required to elucidate its role in such processes. Ultrafast VIS‐pump/IR‐probe s...

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Autores principales: Löffler, Jan G., Deniz, Erhan, Feid, Carolin, Franz, Valentin G., Bredenbeck, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401566/
https://www.ncbi.nlm.nih.gov/pubmed/35226765
http://dx.doi.org/10.1002/anie.202200648
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author Löffler, Jan G.
Deniz, Erhan
Feid, Carolin
Franz, Valentin G.
Bredenbeck, Jens
author_facet Löffler, Jan G.
Deniz, Erhan
Feid, Carolin
Franz, Valentin G.
Bredenbeck, Jens
author_sort Löffler, Jan G.
collection PubMed
description Vibrational energy transfer (VET) is emerging as key mechanism for protein functions, possibly playing an important role for energy dissipation, allosteric regulation, and enzyme catalysis. A deep understanding of VET is required to elucidate its role in such processes. Ultrafast VIS‐pump/IR‐probe spectroscopy can detect pathways of VET in proteins. However, the requirement of having a VET donor and a VET sensor installed simultaneously limits the possible target proteins and sites; to increase their number we compare six IR labels regarding their utility as VET sensors. We compare these labels in terms of their FTIR, and VET signature in VET donor‐sensor dipeptides in different solvents. Furthermore, we incorporated four of these labels in PDZ3 to assess their capabilities in more complex systems. Our results show that different IR labels can be used interchangeably, allowing for free choice of the right label depending on the system under investigation and the methods available.
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spelling pubmed-94015662022-08-26 Versatile Vibrational Energy Sensors for Proteins Löffler, Jan G. Deniz, Erhan Feid, Carolin Franz, Valentin G. Bredenbeck, Jens Angew Chem Int Ed Engl Research Articles Vibrational energy transfer (VET) is emerging as key mechanism for protein functions, possibly playing an important role for energy dissipation, allosteric regulation, and enzyme catalysis. A deep understanding of VET is required to elucidate its role in such processes. Ultrafast VIS‐pump/IR‐probe spectroscopy can detect pathways of VET in proteins. However, the requirement of having a VET donor and a VET sensor installed simultaneously limits the possible target proteins and sites; to increase their number we compare six IR labels regarding their utility as VET sensors. We compare these labels in terms of their FTIR, and VET signature in VET donor‐sensor dipeptides in different solvents. Furthermore, we incorporated four of these labels in PDZ3 to assess their capabilities in more complex systems. Our results show that different IR labels can be used interchangeably, allowing for free choice of the right label depending on the system under investigation and the methods available. John Wiley and Sons Inc. 2022-04-06 2022-05-16 /pmc/articles/PMC9401566/ /pubmed/35226765 http://dx.doi.org/10.1002/anie.202200648 Text en © 2022 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Löffler, Jan G.
Deniz, Erhan
Feid, Carolin
Franz, Valentin G.
Bredenbeck, Jens
Versatile Vibrational Energy Sensors for Proteins
title Versatile Vibrational Energy Sensors for Proteins
title_full Versatile Vibrational Energy Sensors for Proteins
title_fullStr Versatile Vibrational Energy Sensors for Proteins
title_full_unstemmed Versatile Vibrational Energy Sensors for Proteins
title_short Versatile Vibrational Energy Sensors for Proteins
title_sort versatile vibrational energy sensors for proteins
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401566/
https://www.ncbi.nlm.nih.gov/pubmed/35226765
http://dx.doi.org/10.1002/anie.202200648
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