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Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site
Ferritins are ubiquitous diiron enzymes involved in iron(II) detoxification and oxidative stress responses and can act as metabolic iron stores. The overall reaction mechanisms of ferritin enzymes are still unclear, particularly concerning the role of the conserved, near catalytic center Tyr residue...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401865/ https://www.ncbi.nlm.nih.gov/pubmed/35510795 http://dx.doi.org/10.1002/cbic.202200257 |
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author | Yeh, Chieh‐Chih George Mokkawes, Thirakorn Bradley, Justin M. Le Brun, Nick E. de Visser, Sam P. |
author_facet | Yeh, Chieh‐Chih George Mokkawes, Thirakorn Bradley, Justin M. Le Brun, Nick E. de Visser, Sam P. |
author_sort | Yeh, Chieh‐Chih George |
collection | PubMed |
description | Ferritins are ubiquitous diiron enzymes involved in iron(II) detoxification and oxidative stress responses and can act as metabolic iron stores. The overall reaction mechanisms of ferritin enzymes are still unclear, particularly concerning the role of the conserved, near catalytic center Tyr residue. Thus, we carried out a computational study of a ferritin using a large cluster model of well over 300 atoms including its first‐ and second‐coordination sphere. The calculations reveal important insight into the structure and reactivity of ferritins. Specifically, the active site Tyr residue delivers a proton and electron in the catalytic cycle prior to iron(II) oxidation. In addition, the calculations highlight a likely cation binding site at Asp(65), which through long‐range electrostatic interactions, influences the electronic configuration and charge distributions of the metal center. The results are consistent with experimental observations but reveal novel detail of early mechanistic steps that lead to an unusual mixed‐valent iron(III)‐iron(II) center. |
format | Online Article Text |
id | pubmed-9401865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94018652022-08-26 Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site Yeh, Chieh‐Chih George Mokkawes, Thirakorn Bradley, Justin M. Le Brun, Nick E. de Visser, Sam P. Chembiochem Research Articles Ferritins are ubiquitous diiron enzymes involved in iron(II) detoxification and oxidative stress responses and can act as metabolic iron stores. The overall reaction mechanisms of ferritin enzymes are still unclear, particularly concerning the role of the conserved, near catalytic center Tyr residue. Thus, we carried out a computational study of a ferritin using a large cluster model of well over 300 atoms including its first‐ and second‐coordination sphere. The calculations reveal important insight into the structure and reactivity of ferritins. Specifically, the active site Tyr residue delivers a proton and electron in the catalytic cycle prior to iron(II) oxidation. In addition, the calculations highlight a likely cation binding site at Asp(65), which through long‐range electrostatic interactions, influences the electronic configuration and charge distributions of the metal center. The results are consistent with experimental observations but reveal novel detail of early mechanistic steps that lead to an unusual mixed‐valent iron(III)‐iron(II) center. John Wiley and Sons Inc. 2022-05-23 2022-07-05 /pmc/articles/PMC9401865/ /pubmed/35510795 http://dx.doi.org/10.1002/cbic.202200257 Text en © 2022 The Authors. ChemBioChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Yeh, Chieh‐Chih George Mokkawes, Thirakorn Bradley, Justin M. Le Brun, Nick E. de Visser, Sam P. Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title | Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title_full | Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title_fullStr | Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title_full_unstemmed | Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title_short | Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site |
title_sort | second coordination sphere effects on the mechanistic pathways for dioxygen activation by a ferritin: involvement of a tyr radical and the identification of a cation binding site |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9401865/ https://www.ncbi.nlm.nih.gov/pubmed/35510795 http://dx.doi.org/10.1002/cbic.202200257 |
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