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qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data

The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structur...

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Autores principales: Karakuzu, Agah, Appelhoff, Stefan, Auer, Tibor, Boudreau, Mathieu, Feingold, Franklin, Khan, Ali R., Lazari, Alberto, Markiewicz, Chris, Mulder, Martijn, Phillips, Christophe, Salo, Taylor, Stikov, Nikola, Whitaker, Kirstie, de Hollander, Gilles
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402561/
https://www.ncbi.nlm.nih.gov/pubmed/36002444
http://dx.doi.org/10.1038/s41597-022-01571-4
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author Karakuzu, Agah
Appelhoff, Stefan
Auer, Tibor
Boudreau, Mathieu
Feingold, Franklin
Khan, Ali R.
Lazari, Alberto
Markiewicz, Chris
Mulder, Martijn
Phillips, Christophe
Salo, Taylor
Stikov, Nikola
Whitaker, Kirstie
de Hollander, Gilles
author_facet Karakuzu, Agah
Appelhoff, Stefan
Auer, Tibor
Boudreau, Mathieu
Feingold, Franklin
Khan, Ali R.
Lazari, Alberto
Markiewicz, Chris
Mulder, Martijn
Phillips, Christophe
Salo, Taylor
Stikov, Nikola
Whitaker, Kirstie
de Hollander, Gilles
author_sort Karakuzu, Agah
collection PubMed
description The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging.
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spelling pubmed-94025612022-08-26 qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data Karakuzu, Agah Appelhoff, Stefan Auer, Tibor Boudreau, Mathieu Feingold, Franklin Khan, Ali R. Lazari, Alberto Markiewicz, Chris Mulder, Martijn Phillips, Christophe Salo, Taylor Stikov, Nikola Whitaker, Kirstie de Hollander, Gilles Sci Data Article The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging. Nature Publishing Group UK 2022-08-24 /pmc/articles/PMC9402561/ /pubmed/36002444 http://dx.doi.org/10.1038/s41597-022-01571-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Karakuzu, Agah
Appelhoff, Stefan
Auer, Tibor
Boudreau, Mathieu
Feingold, Franklin
Khan, Ali R.
Lazari, Alberto
Markiewicz, Chris
Mulder, Martijn
Phillips, Christophe
Salo, Taylor
Stikov, Nikola
Whitaker, Kirstie
de Hollander, Gilles
qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title_full qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title_fullStr qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title_full_unstemmed qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title_short qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
title_sort qmri-bids: an extension to the brain imaging data structure for quantitative magnetic resonance imaging data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402561/
https://www.ncbi.nlm.nih.gov/pubmed/36002444
http://dx.doi.org/10.1038/s41597-022-01571-4
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