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qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data
The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structur...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402561/ https://www.ncbi.nlm.nih.gov/pubmed/36002444 http://dx.doi.org/10.1038/s41597-022-01571-4 |
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author | Karakuzu, Agah Appelhoff, Stefan Auer, Tibor Boudreau, Mathieu Feingold, Franklin Khan, Ali R. Lazari, Alberto Markiewicz, Chris Mulder, Martijn Phillips, Christophe Salo, Taylor Stikov, Nikola Whitaker, Kirstie de Hollander, Gilles |
author_facet | Karakuzu, Agah Appelhoff, Stefan Auer, Tibor Boudreau, Mathieu Feingold, Franklin Khan, Ali R. Lazari, Alberto Markiewicz, Chris Mulder, Martijn Phillips, Christophe Salo, Taylor Stikov, Nikola Whitaker, Kirstie de Hollander, Gilles |
author_sort | Karakuzu, Agah |
collection | PubMed |
description | The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging. |
format | Online Article Text |
id | pubmed-9402561 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94025612022-08-26 qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data Karakuzu, Agah Appelhoff, Stefan Auer, Tibor Boudreau, Mathieu Feingold, Franklin Khan, Ali R. Lazari, Alberto Markiewicz, Chris Mulder, Martijn Phillips, Christophe Salo, Taylor Stikov, Nikola Whitaker, Kirstie de Hollander, Gilles Sci Data Article The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging. Nature Publishing Group UK 2022-08-24 /pmc/articles/PMC9402561/ /pubmed/36002444 http://dx.doi.org/10.1038/s41597-022-01571-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Karakuzu, Agah Appelhoff, Stefan Auer, Tibor Boudreau, Mathieu Feingold, Franklin Khan, Ali R. Lazari, Alberto Markiewicz, Chris Mulder, Martijn Phillips, Christophe Salo, Taylor Stikov, Nikola Whitaker, Kirstie de Hollander, Gilles qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title | qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title_full | qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title_fullStr | qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title_full_unstemmed | qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title_short | qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
title_sort | qmri-bids: an extension to the brain imaging data structure for quantitative magnetic resonance imaging data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402561/ https://www.ncbi.nlm.nih.gov/pubmed/36002444 http://dx.doi.org/10.1038/s41597-022-01571-4 |
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