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Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing

Surface Plasmon Resonance (SPR) biosensing is a well-established tool for the investigation of binding kinetics between a soluble species and an immobilized (bio)molecule. While robust and accurate data analysis techniques are readily available for single species, methods to exploit data collected w...

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Autores principales: Gaudreault, Jimmy, Durocher, Yves, Henry, Olivier, De Crescenzo, Gregory
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402583/
https://www.ncbi.nlm.nih.gov/pubmed/36002549
http://dx.doi.org/10.1038/s41598-022-18450-y
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author Gaudreault, Jimmy
Durocher, Yves
Henry, Olivier
De Crescenzo, Gregory
author_facet Gaudreault, Jimmy
Durocher, Yves
Henry, Olivier
De Crescenzo, Gregory
author_sort Gaudreault, Jimmy
collection PubMed
description Surface Plasmon Resonance (SPR) biosensing is a well-established tool for the investigation of binding kinetics between a soluble species and an immobilized (bio)molecule. While robust and accurate data analysis techniques are readily available for single species, methods to exploit data collected with a solution containing multiple interactants are scarce. In a previous study, our group proposed two data analysis algorithms for (1) the precise and reliable identification of the kinetic parameters of N interactants present at different ratios in N mixtures and (2) the estimation of the composition of a given mixture, assuming that the kinetic parameters and the total concentration of all interactants are known. Here, we extend the first algorithm by reducing the number of necessary mixtures. This is achieved by conducting experiments at different temperatures. Through the Van’t Hoff and Eyring equations, identifying the kinetic and thermodynamic parameters of N binders becomes possible with M mixtures with M comprised between 2 and N and at least N/M temperatures. The second algorithm is improved by adding the total analyte concentration as a supplementary variable to be identified in an optimization routine. We validated our analysis framework experimentally with a system consisting of mixtures of low molecular weight drugs, each competing to bind to an immobilized protein. We believe that the analysis of mixtures and composition estimation could pave the way for SPR biosensing to become a bioprocess monitoring tool, on top of expanding its already substantial role in drug discovery and development.
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spelling pubmed-94025832022-08-26 Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing Gaudreault, Jimmy Durocher, Yves Henry, Olivier De Crescenzo, Gregory Sci Rep Article Surface Plasmon Resonance (SPR) biosensing is a well-established tool for the investigation of binding kinetics between a soluble species and an immobilized (bio)molecule. While robust and accurate data analysis techniques are readily available for single species, methods to exploit data collected with a solution containing multiple interactants are scarce. In a previous study, our group proposed two data analysis algorithms for (1) the precise and reliable identification of the kinetic parameters of N interactants present at different ratios in N mixtures and (2) the estimation of the composition of a given mixture, assuming that the kinetic parameters and the total concentration of all interactants are known. Here, we extend the first algorithm by reducing the number of necessary mixtures. This is achieved by conducting experiments at different temperatures. Through the Van’t Hoff and Eyring equations, identifying the kinetic and thermodynamic parameters of N binders becomes possible with M mixtures with M comprised between 2 and N and at least N/M temperatures. The second algorithm is improved by adding the total analyte concentration as a supplementary variable to be identified in an optimization routine. We validated our analysis framework experimentally with a system consisting of mixtures of low molecular weight drugs, each competing to bind to an immobilized protein. We believe that the analysis of mixtures and composition estimation could pave the way for SPR biosensing to become a bioprocess monitoring tool, on top of expanding its already substantial role in drug discovery and development. Nature Publishing Group UK 2022-08-24 /pmc/articles/PMC9402583/ /pubmed/36002549 http://dx.doi.org/10.1038/s41598-022-18450-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Gaudreault, Jimmy
Durocher, Yves
Henry, Olivier
De Crescenzo, Gregory
Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title_full Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title_fullStr Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title_full_unstemmed Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title_short Multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
title_sort multi-temperature experiments to ease analysis of heterogeneous binder solutions by surface plasmon resonance biosensing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402583/
https://www.ncbi.nlm.nih.gov/pubmed/36002549
http://dx.doi.org/10.1038/s41598-022-18450-y
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