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ASER: Animal Sex Reversal Database

Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hu...

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Autores principales: Li, Yangyang, Chen, Zonggui, Liu, Hairong, Li, Qiming, Lin, Xing, Ji, Shuhui, Li, Rui, Li, Shaopeng, Fan, Weiliang, Zhao, Haiping, Zhu, Zuoyan, Hu, Wei, Zhou, Yu, Luo, Daji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402789/
https://www.ncbi.nlm.nih.gov/pubmed/34839012
http://dx.doi.org/10.1016/j.gpb.2021.10.001
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author Li, Yangyang
Chen, Zonggui
Liu, Hairong
Li, Qiming
Lin, Xing
Ji, Shuhui
Li, Rui
Li, Shaopeng
Fan, Weiliang
Zhao, Haiping
Zhu, Zuoyan
Hu, Wei
Zhou, Yu
Luo, Daji
author_facet Li, Yangyang
Chen, Zonggui
Liu, Hairong
Li, Qiming
Lin, Xing
Ji, Shuhui
Li, Rui
Li, Shaopeng
Fan, Weiliang
Zhao, Haiping
Zhu, Zuoyan
Hu, Wei
Zhou, Yu
Luo, Daji
author_sort Li, Yangyang
collection PubMed
description Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hub of sex reversal information is still lacking. Here, we constructed a comprehensive database named ASER (Animal Sex Reversal) by integrating sex reversal-related data of 18 species from teleostei to mammalia. We systematically collected 40,018 published papers and mined the sex reversal-associated genes (SRGs), including their regulatory networks, from 1611 core papers. We annotated homologous genes and computed conservation scores for whole genomes across the 18 species. Furthermore, we collected available RNA-seq datasets and investigated the expression dynamics of SRGs during sex reversal or sex determination processes. In addition, we manually annotated 550 in situ hybridization (ISH), fluorescence in situ hybridization (FISH), and immunohistochemistry (IHC) images of SRGs from the literature and described their spatial expression in the gonads. Collectively, ASER provides a unique and integrated resource for researchers to query and reuse organized data to explore the mechanisms and applications of SRGs in animal breeding and human health. The ASER database is publicly available at http://aser.ihb.ac.cn/.
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spelling pubmed-94027892022-08-26 ASER: Animal Sex Reversal Database Li, Yangyang Chen, Zonggui Liu, Hairong Li, Qiming Lin, Xing Ji, Shuhui Li, Rui Li, Shaopeng Fan, Weiliang Zhao, Haiping Zhu, Zuoyan Hu, Wei Zhou, Yu Luo, Daji Genomics Proteomics Bioinformatics Database Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hub of sex reversal information is still lacking. Here, we constructed a comprehensive database named ASER (Animal Sex Reversal) by integrating sex reversal-related data of 18 species from teleostei to mammalia. We systematically collected 40,018 published papers and mined the sex reversal-associated genes (SRGs), including their regulatory networks, from 1611 core papers. We annotated homologous genes and computed conservation scores for whole genomes across the 18 species. Furthermore, we collected available RNA-seq datasets and investigated the expression dynamics of SRGs during sex reversal or sex determination processes. In addition, we manually annotated 550 in situ hybridization (ISH), fluorescence in situ hybridization (FISH), and immunohistochemistry (IHC) images of SRGs from the literature and described their spatial expression in the gonads. Collectively, ASER provides a unique and integrated resource for researchers to query and reuse organized data to explore the mechanisms and applications of SRGs in animal breeding and human health. The ASER database is publicly available at http://aser.ihb.ac.cn/. Elsevier 2021-12 2021-11-25 /pmc/articles/PMC9402789/ /pubmed/34839012 http://dx.doi.org/10.1016/j.gpb.2021.10.001 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Database
Li, Yangyang
Chen, Zonggui
Liu, Hairong
Li, Qiming
Lin, Xing
Ji, Shuhui
Li, Rui
Li, Shaopeng
Fan, Weiliang
Zhao, Haiping
Zhu, Zuoyan
Hu, Wei
Zhou, Yu
Luo, Daji
ASER: Animal Sex Reversal Database
title ASER: Animal Sex Reversal Database
title_full ASER: Animal Sex Reversal Database
title_fullStr ASER: Animal Sex Reversal Database
title_full_unstemmed ASER: Animal Sex Reversal Database
title_short ASER: Animal Sex Reversal Database
title_sort aser: animal sex reversal database
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402789/
https://www.ncbi.nlm.nih.gov/pubmed/34839012
http://dx.doi.org/10.1016/j.gpb.2021.10.001
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