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ASER: Animal Sex Reversal Database
Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hu...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402789/ https://www.ncbi.nlm.nih.gov/pubmed/34839012 http://dx.doi.org/10.1016/j.gpb.2021.10.001 |
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author | Li, Yangyang Chen, Zonggui Liu, Hairong Li, Qiming Lin, Xing Ji, Shuhui Li, Rui Li, Shaopeng Fan, Weiliang Zhao, Haiping Zhu, Zuoyan Hu, Wei Zhou, Yu Luo, Daji |
author_facet | Li, Yangyang Chen, Zonggui Liu, Hairong Li, Qiming Lin, Xing Ji, Shuhui Li, Rui Li, Shaopeng Fan, Weiliang Zhao, Haiping Zhu, Zuoyan Hu, Wei Zhou, Yu Luo, Daji |
author_sort | Li, Yangyang |
collection | PubMed |
description | Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hub of sex reversal information is still lacking. Here, we constructed a comprehensive database named ASER (Animal Sex Reversal) by integrating sex reversal-related data of 18 species from teleostei to mammalia. We systematically collected 40,018 published papers and mined the sex reversal-associated genes (SRGs), including their regulatory networks, from 1611 core papers. We annotated homologous genes and computed conservation scores for whole genomes across the 18 species. Furthermore, we collected available RNA-seq datasets and investigated the expression dynamics of SRGs during sex reversal or sex determination processes. In addition, we manually annotated 550 in situ hybridization (ISH), fluorescence in situ hybridization (FISH), and immunohistochemistry (IHC) images of SRGs from the literature and described their spatial expression in the gonads. Collectively, ASER provides a unique and integrated resource for researchers to query and reuse organized data to explore the mechanisms and applications of SRGs in animal breeding and human health. The ASER database is publicly available at http://aser.ihb.ac.cn/. |
format | Online Article Text |
id | pubmed-9402789 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-94027892022-08-26 ASER: Animal Sex Reversal Database Li, Yangyang Chen, Zonggui Liu, Hairong Li, Qiming Lin, Xing Ji, Shuhui Li, Rui Li, Shaopeng Fan, Weiliang Zhao, Haiping Zhu, Zuoyan Hu, Wei Zhou, Yu Luo, Daji Genomics Proteomics Bioinformatics Database Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hub of sex reversal information is still lacking. Here, we constructed a comprehensive database named ASER (Animal Sex Reversal) by integrating sex reversal-related data of 18 species from teleostei to mammalia. We systematically collected 40,018 published papers and mined the sex reversal-associated genes (SRGs), including their regulatory networks, from 1611 core papers. We annotated homologous genes and computed conservation scores for whole genomes across the 18 species. Furthermore, we collected available RNA-seq datasets and investigated the expression dynamics of SRGs during sex reversal or sex determination processes. In addition, we manually annotated 550 in situ hybridization (ISH), fluorescence in situ hybridization (FISH), and immunohistochemistry (IHC) images of SRGs from the literature and described their spatial expression in the gonads. Collectively, ASER provides a unique and integrated resource for researchers to query and reuse organized data to explore the mechanisms and applications of SRGs in animal breeding and human health. The ASER database is publicly available at http://aser.ihb.ac.cn/. Elsevier 2021-12 2021-11-25 /pmc/articles/PMC9402789/ /pubmed/34839012 http://dx.doi.org/10.1016/j.gpb.2021.10.001 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Database Li, Yangyang Chen, Zonggui Liu, Hairong Li, Qiming Lin, Xing Ji, Shuhui Li, Rui Li, Shaopeng Fan, Weiliang Zhao, Haiping Zhu, Zuoyan Hu, Wei Zhou, Yu Luo, Daji ASER: Animal Sex Reversal Database |
title | ASER: Animal Sex Reversal Database |
title_full | ASER: Animal Sex Reversal Database |
title_fullStr | ASER: Animal Sex Reversal Database |
title_full_unstemmed | ASER: Animal Sex Reversal Database |
title_short | ASER: Animal Sex Reversal Database |
title_sort | aser: animal sex reversal database |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9402789/ https://www.ncbi.nlm.nih.gov/pubmed/34839012 http://dx.doi.org/10.1016/j.gpb.2021.10.001 |
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