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A scale-dependent measure of system dimensionality
A fundamental problem in science is uncovering the effective number of degrees of freedom in a complex system: its dimensionality. A system’s dimensionality depends on its spatiotemporal scale. Here, we introduce a scale-dependent generalization of a classic enumeration of latent variables, the part...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403367/ https://www.ncbi.nlm.nih.gov/pubmed/36033586 http://dx.doi.org/10.1016/j.patter.2022.100555 |
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author | Recanatesi, Stefano Bradde, Serena Balasubramanian, Vijay Steinmetz, Nicholas A. Shea-Brown, Eric |
author_facet | Recanatesi, Stefano Bradde, Serena Balasubramanian, Vijay Steinmetz, Nicholas A. Shea-Brown, Eric |
author_sort | Recanatesi, Stefano |
collection | PubMed |
description | A fundamental problem in science is uncovering the effective number of degrees of freedom in a complex system: its dimensionality. A system’s dimensionality depends on its spatiotemporal scale. Here, we introduce a scale-dependent generalization of a classic enumeration of latent variables, the participation ratio. We demonstrate how the scale-dependent participation ratio identifies the appropriate dimension at local, intermediate, and global scales in several systems such as the Lorenz attractor, hidden Markov models, and switching linear dynamical systems. We show analytically how, at different limiting scales, the scale-dependent participation ratio relates to well-established measures of dimensionality. This measure applied in neural population recordings across multiple brain areas and brain states shows fundamental trends in the dimensionality of neural activity—for example, in behaviorally engaged versus spontaneous states. Our novel method unifies widely used measures of dimensionality and applies broadly to multivariate data across several fields of science. |
format | Online Article Text |
id | pubmed-9403367 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-94033672022-08-26 A scale-dependent measure of system dimensionality Recanatesi, Stefano Bradde, Serena Balasubramanian, Vijay Steinmetz, Nicholas A. Shea-Brown, Eric Patterns (N Y) Article A fundamental problem in science is uncovering the effective number of degrees of freedom in a complex system: its dimensionality. A system’s dimensionality depends on its spatiotemporal scale. Here, we introduce a scale-dependent generalization of a classic enumeration of latent variables, the participation ratio. We demonstrate how the scale-dependent participation ratio identifies the appropriate dimension at local, intermediate, and global scales in several systems such as the Lorenz attractor, hidden Markov models, and switching linear dynamical systems. We show analytically how, at different limiting scales, the scale-dependent participation ratio relates to well-established measures of dimensionality. This measure applied in neural population recordings across multiple brain areas and brain states shows fundamental trends in the dimensionality of neural activity—for example, in behaviorally engaged versus spontaneous states. Our novel method unifies widely used measures of dimensionality and applies broadly to multivariate data across several fields of science. Elsevier 2022-08-06 /pmc/articles/PMC9403367/ /pubmed/36033586 http://dx.doi.org/10.1016/j.patter.2022.100555 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Recanatesi, Stefano Bradde, Serena Balasubramanian, Vijay Steinmetz, Nicholas A. Shea-Brown, Eric A scale-dependent measure of system dimensionality |
title | A scale-dependent measure of system dimensionality |
title_full | A scale-dependent measure of system dimensionality |
title_fullStr | A scale-dependent measure of system dimensionality |
title_full_unstemmed | A scale-dependent measure of system dimensionality |
title_short | A scale-dependent measure of system dimensionality |
title_sort | scale-dependent measure of system dimensionality |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403367/ https://www.ncbi.nlm.nih.gov/pubmed/36033586 http://dx.doi.org/10.1016/j.patter.2022.100555 |
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