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A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function

BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is train...

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Detalles Bibliográficos
Autores principales: Xu, Lin, Xu, Jingwen, Zheng, Qian, Yuan, Jianying, Liu, Jiajia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403593/
https://www.ncbi.nlm.nih.gov/pubmed/36060590
http://dx.doi.org/10.21037/qims-21-1212
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author Xu, Lin
Xu, Jingwen
Zheng, Qian
Yuan, Jianying
Liu, Jiajia
author_facet Xu, Lin
Xu, Jingwen
Zheng, Qian
Yuan, Jianying
Liu, Jiajia
author_sort Xu, Lin
collection PubMed
description BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is trained individually for each scan using scan-specific autocalibrating signal data. METHODS: The original U-net was tailored with fewer layers and channels, and the network was trained using the autocalibrating signal data with a mixing loss function involving magnitude loss and phase loss. The performance of the proposed method was measured using both phantom and in vivo datasets compared to scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) and generalized autocalibrating partially parallel acquisitions (GRAPPA). RESULTS: The proposed method alleviates aliasing artifacts and reduces noise with an acceleration factor of four for phantom and in vivo data. Compared with RAKI and GRAPPA, the proposed method represents an improvement with a structural similarity index measure of between 0.02 and 0.05 and a peak signal-to-noise ratio (PSNR) of between 0.1 and 3. CONCLUSIONS: The proposed method introduces a miniature U-net to reconstruct the missing k-space data, which can provide an optimal trade-off between network performance and requirement of training samples. Experimental results indicate that the proposed method can improve image quality compared with the deep learning-based k-space parallel magnitude resonance imaging method.
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spelling pubmed-94035932022-09-01 A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function Xu, Lin Xu, Jingwen Zheng, Qian Yuan, Jianying Liu, Jiajia Quant Imaging Med Surg Original Article BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is trained individually for each scan using scan-specific autocalibrating signal data. METHODS: The original U-net was tailored with fewer layers and channels, and the network was trained using the autocalibrating signal data with a mixing loss function involving magnitude loss and phase loss. The performance of the proposed method was measured using both phantom and in vivo datasets compared to scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) and generalized autocalibrating partially parallel acquisitions (GRAPPA). RESULTS: The proposed method alleviates aliasing artifacts and reduces noise with an acceleration factor of four for phantom and in vivo data. Compared with RAKI and GRAPPA, the proposed method represents an improvement with a structural similarity index measure of between 0.02 and 0.05 and a peak signal-to-noise ratio (PSNR) of between 0.1 and 3. CONCLUSIONS: The proposed method introduces a miniature U-net to reconstruct the missing k-space data, which can provide an optimal trade-off between network performance and requirement of training samples. Experimental results indicate that the proposed method can improve image quality compared with the deep learning-based k-space parallel magnitude resonance imaging method. AME Publishing Company 2022-09 /pmc/articles/PMC9403593/ /pubmed/36060590 http://dx.doi.org/10.21037/qims-21-1212 Text en 2022 Quantitative Imaging in Medicine and Surgery. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Xu, Lin
Xu, Jingwen
Zheng, Qian
Yuan, Jianying
Liu, Jiajia
A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title_full A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title_fullStr A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title_full_unstemmed A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title_short A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
title_sort miniature u-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403593/
https://www.ncbi.nlm.nih.gov/pubmed/36060590
http://dx.doi.org/10.21037/qims-21-1212
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