Cargando…
A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function
BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is train...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403593/ https://www.ncbi.nlm.nih.gov/pubmed/36060590 http://dx.doi.org/10.21037/qims-21-1212 |
_version_ | 1784773412155031552 |
---|---|
author | Xu, Lin Xu, Jingwen Zheng, Qian Yuan, Jianying Liu, Jiajia |
author_facet | Xu, Lin Xu, Jingwen Zheng, Qian Yuan, Jianying Liu, Jiajia |
author_sort | Xu, Lin |
collection | PubMed |
description | BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is trained individually for each scan using scan-specific autocalibrating signal data. METHODS: The original U-net was tailored with fewer layers and channels, and the network was trained using the autocalibrating signal data with a mixing loss function involving magnitude loss and phase loss. The performance of the proposed method was measured using both phantom and in vivo datasets compared to scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) and generalized autocalibrating partially parallel acquisitions (GRAPPA). RESULTS: The proposed method alleviates aliasing artifacts and reduces noise with an acceleration factor of four for phantom and in vivo data. Compared with RAKI and GRAPPA, the proposed method represents an improvement with a structural similarity index measure of between 0.02 and 0.05 and a peak signal-to-noise ratio (PSNR) of between 0.1 and 3. CONCLUSIONS: The proposed method introduces a miniature U-net to reconstruct the missing k-space data, which can provide an optimal trade-off between network performance and requirement of training samples. Experimental results indicate that the proposed method can improve image quality compared with the deep learning-based k-space parallel magnitude resonance imaging method. |
format | Online Article Text |
id | pubmed-9403593 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-94035932022-09-01 A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function Xu, Lin Xu, Jingwen Zheng, Qian Yuan, Jianying Liu, Jiajia Quant Imaging Med Surg Original Article BACKGROUND: Deep learning-based magnetic resonance imaging (MRI) methods require in most cases a separate dataset with thousands of images for each anatomical site to train the network model. This paper proposes a miniature U-net method for k-space-based parallel MRI where the network model is trained individually for each scan using scan-specific autocalibrating signal data. METHODS: The original U-net was tailored with fewer layers and channels, and the network was trained using the autocalibrating signal data with a mixing loss function involving magnitude loss and phase loss. The performance of the proposed method was measured using both phantom and in vivo datasets compared to scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) and generalized autocalibrating partially parallel acquisitions (GRAPPA). RESULTS: The proposed method alleviates aliasing artifacts and reduces noise with an acceleration factor of four for phantom and in vivo data. Compared with RAKI and GRAPPA, the proposed method represents an improvement with a structural similarity index measure of between 0.02 and 0.05 and a peak signal-to-noise ratio (PSNR) of between 0.1 and 3. CONCLUSIONS: The proposed method introduces a miniature U-net to reconstruct the missing k-space data, which can provide an optimal trade-off between network performance and requirement of training samples. Experimental results indicate that the proposed method can improve image quality compared with the deep learning-based k-space parallel magnitude resonance imaging method. AME Publishing Company 2022-09 /pmc/articles/PMC9403593/ /pubmed/36060590 http://dx.doi.org/10.21037/qims-21-1212 Text en 2022 Quantitative Imaging in Medicine and Surgery. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Original Article Xu, Lin Xu, Jingwen Zheng, Qian Yuan, Jianying Liu, Jiajia A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title | A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title_full | A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title_fullStr | A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title_full_unstemmed | A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title_short | A miniature U-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
title_sort | miniature u-net for k-space-based parallel magnetic resonance imaging reconstruction with a mixed loss function |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403593/ https://www.ncbi.nlm.nih.gov/pubmed/36060590 http://dx.doi.org/10.21037/qims-21-1212 |
work_keys_str_mv | AT xulin aminiatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT xujingwen aminiatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT zhengqian aminiatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT yuanjianying aminiatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT liujiajia aminiatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT xulin miniatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT xujingwen miniatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT zhengqian miniatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT yuanjianying miniatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction AT liujiajia miniatureunetforkspacebasedparallelmagneticresonanceimagingreconstructionwithamixedlossfunction |