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Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection
Purpose: This study aims to illustrate the cellular landscape in the aorta of experimental aortic dissection (AD) and elaborate on the smooth muscle cells (SMCs) heterogeneity and functions among various cell types. Methods: Male Apolipoprotein deficient (ApoE(−/−)) mice at 28 weeks of age were infu...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403608/ https://www.ncbi.nlm.nih.gov/pubmed/36035191 http://dx.doi.org/10.3389/fgene.2022.836593 |
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author | Xu, Cheng Liu, Xiaowei Fang, Xiaoxin Yu, Lei Lau, Hui Chong Li, Danlei Liu, Xiaoman Li, Haili Ren, Justin Xu, Baohui Jiang, Jianjun Tang, Lijiang Chen, Xiaofeng |
author_facet | Xu, Cheng Liu, Xiaowei Fang, Xiaoxin Yu, Lei Lau, Hui Chong Li, Danlei Liu, Xiaoman Li, Haili Ren, Justin Xu, Baohui Jiang, Jianjun Tang, Lijiang Chen, Xiaofeng |
author_sort | Xu, Cheng |
collection | PubMed |
description | Purpose: This study aims to illustrate the cellular landscape in the aorta of experimental aortic dissection (AD) and elaborate on the smooth muscle cells (SMCs) heterogeneity and functions among various cell types. Methods: Male Apolipoprotein deficient (ApoE(−/−)) mice at 28 weeks of age were infused with Ang II (2,500 ng/kg/min) to induce AD. Aortas from euthanized mice were harvested after 7 days for 10×Genomics single-cell RNA sequencing (scRNA-seq), followed by the identification of cell types and differentially expressed genes (DEGs). Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis was conducted. Results: AD was successfully induced in ApoE(−/−) mice. scRNA-seq identified 15 cell clusters and nine cell types, including non-immune cells (endothelials, fibroblasts, and SMCs) and immune cells (B cells, natural killer T cell, macrophages, dendritic cells, neutrophils, and mast cells). The relative numbers of SMCs were remarkably changed, and seven core DEGs (ACTA2,IL6,CTGF,BGN,ITGA8,THBS1, and CDH5) were identified in SMCs. Moreover, we found SMCs can differentiate into 8 different subtypes through single-cell trajectory analysis. Conclusion: scRNA-seq technology can successfully identify unique cell composition in experimental AD. To our knowledge, this is the first study that provided the complete cellular landscape in AD tissues from mice, seven core DEGs and eight subtypes of SMCs were identified, and the SMCs have evolution from matrix type to inflammatory type. |
format | Online Article Text |
id | pubmed-9403608 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94036082022-08-26 Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection Xu, Cheng Liu, Xiaowei Fang, Xiaoxin Yu, Lei Lau, Hui Chong Li, Danlei Liu, Xiaoman Li, Haili Ren, Justin Xu, Baohui Jiang, Jianjun Tang, Lijiang Chen, Xiaofeng Front Genet Genetics Purpose: This study aims to illustrate the cellular landscape in the aorta of experimental aortic dissection (AD) and elaborate on the smooth muscle cells (SMCs) heterogeneity and functions among various cell types. Methods: Male Apolipoprotein deficient (ApoE(−/−)) mice at 28 weeks of age were infused with Ang II (2,500 ng/kg/min) to induce AD. Aortas from euthanized mice were harvested after 7 days for 10×Genomics single-cell RNA sequencing (scRNA-seq), followed by the identification of cell types and differentially expressed genes (DEGs). Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis was conducted. Results: AD was successfully induced in ApoE(−/−) mice. scRNA-seq identified 15 cell clusters and nine cell types, including non-immune cells (endothelials, fibroblasts, and SMCs) and immune cells (B cells, natural killer T cell, macrophages, dendritic cells, neutrophils, and mast cells). The relative numbers of SMCs were remarkably changed, and seven core DEGs (ACTA2,IL6,CTGF,BGN,ITGA8,THBS1, and CDH5) were identified in SMCs. Moreover, we found SMCs can differentiate into 8 different subtypes through single-cell trajectory analysis. Conclusion: scRNA-seq technology can successfully identify unique cell composition in experimental AD. To our knowledge, this is the first study that provided the complete cellular landscape in AD tissues from mice, seven core DEGs and eight subtypes of SMCs were identified, and the SMCs have evolution from matrix type to inflammatory type. Frontiers Media S.A. 2022-08-11 /pmc/articles/PMC9403608/ /pubmed/36035191 http://dx.doi.org/10.3389/fgene.2022.836593 Text en Copyright © 2022 Xu, Liu, Fang, Yu, Lau, Li, Liu, Li, Ren, Xu, Jiang, Tang and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Xu, Cheng Liu, Xiaowei Fang, Xiaoxin Yu, Lei Lau, Hui Chong Li, Danlei Liu, Xiaoman Li, Haili Ren, Justin Xu, Baohui Jiang, Jianjun Tang, Lijiang Chen, Xiaofeng Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title | Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title_full | Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title_fullStr | Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title_full_unstemmed | Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title_short | Single-Cell RNA Sequencing Reveals Smooth Muscle Cells Heterogeneity in Experimental Aortic Dissection |
title_sort | single-cell rna sequencing reveals smooth muscle cells heterogeneity in experimental aortic dissection |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9403608/ https://www.ncbi.nlm.nih.gov/pubmed/36035191 http://dx.doi.org/10.3389/fgene.2022.836593 |
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