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Tabular strategies for metadata in ecology, evolution, and the environmental sciences

Data support knowledge development and theory advances in ecology and evolution. We are increasingly reusing data within our teams and projects and through the global, openly archived datasets of others. Metadata can be challenging to write and interpret, but it is always crucial for reuse. The valu...

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Autores principales: Lortie, C. J., Vargas Poulsen, Camila, Brun, Julien, Kui, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9405493/
https://www.ncbi.nlm.nih.gov/pubmed/36035265
http://dx.doi.org/10.1002/ece3.9245
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author Lortie, C. J.
Vargas Poulsen, Camila
Brun, Julien
Kui, Li
author_facet Lortie, C. J.
Vargas Poulsen, Camila
Brun, Julien
Kui, Li
author_sort Lortie, C. J.
collection PubMed
description Data support knowledge development and theory advances in ecology and evolution. We are increasingly reusing data within our teams and projects and through the global, openly archived datasets of others. Metadata can be challenging to write and interpret, but it is always crucial for reuse. The value metadata cannot be overstated—even as a relatively independent research object because it describes the work that has been done in a structured format. We advance a new perspective and classify methods for metadata curation and development with tables. Tables with templates can be effectively used to capture all components of an experiment or project in a single, easy‐to‐read file familiar to most scientists. If coupled with the R programming language, metadata from tables can then be rapidly and reproducibly converted to publication formats including extensible markup language files suitable for data repositories. Tables can also be used to summarize existing metadata and store metadata across many datasets. A case study is provided and the added benefits of tables for metadata, a priori, are developed to ensure a more streamlined publishing process for many data repositories used in ecology, evolution, and the environmental sciences. In ecology and evolution, researchers are often highly tabular thinkers from experimental data collection in the lab and/or field, and representations of metadata as a table will provide novel research and reuse insights.
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spelling pubmed-94054932022-08-26 Tabular strategies for metadata in ecology, evolution, and the environmental sciences Lortie, C. J. Vargas Poulsen, Camila Brun, Julien Kui, Li Ecol Evol Viewpoint Data support knowledge development and theory advances in ecology and evolution. We are increasingly reusing data within our teams and projects and through the global, openly archived datasets of others. Metadata can be challenging to write and interpret, but it is always crucial for reuse. The value metadata cannot be overstated—even as a relatively independent research object because it describes the work that has been done in a structured format. We advance a new perspective and classify methods for metadata curation and development with tables. Tables with templates can be effectively used to capture all components of an experiment or project in a single, easy‐to‐read file familiar to most scientists. If coupled with the R programming language, metadata from tables can then be rapidly and reproducibly converted to publication formats including extensible markup language files suitable for data repositories. Tables can also be used to summarize existing metadata and store metadata across many datasets. A case study is provided and the added benefits of tables for metadata, a priori, are developed to ensure a more streamlined publishing process for many data repositories used in ecology, evolution, and the environmental sciences. In ecology and evolution, researchers are often highly tabular thinkers from experimental data collection in the lab and/or field, and representations of metadata as a table will provide novel research and reuse insights. John Wiley and Sons Inc. 2022-08-25 /pmc/articles/PMC9405493/ /pubmed/36035265 http://dx.doi.org/10.1002/ece3.9245 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Viewpoint
Lortie, C. J.
Vargas Poulsen, Camila
Brun, Julien
Kui, Li
Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title_full Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title_fullStr Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title_full_unstemmed Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title_short Tabular strategies for metadata in ecology, evolution, and the environmental sciences
title_sort tabular strategies for metadata in ecology, evolution, and the environmental sciences
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9405493/
https://www.ncbi.nlm.nih.gov/pubmed/36035265
http://dx.doi.org/10.1002/ece3.9245
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