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Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging

While machine learning (ML) methods may significantly improve image quality for SPECT imaging for the diagnosis and monitoring of Parkinson’s disease (PD), they require a large amount of data for training. It is often difficult to collect a large population of patient data to support the ML research...

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Autores principales: Shao, Wenyi, Leung, Kevin H., Xu, Jingyan, Coughlin, Jennifer M., Pomper, Martin G., Du, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406894/
https://www.ncbi.nlm.nih.gov/pubmed/36010295
http://dx.doi.org/10.3390/diagnostics12081945
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author Shao, Wenyi
Leung, Kevin H.
Xu, Jingyan
Coughlin, Jennifer M.
Pomper, Martin G.
Du, Yong
author_facet Shao, Wenyi
Leung, Kevin H.
Xu, Jingyan
Coughlin, Jennifer M.
Pomper, Martin G.
Du, Yong
author_sort Shao, Wenyi
collection PubMed
description While machine learning (ML) methods may significantly improve image quality for SPECT imaging for the diagnosis and monitoring of Parkinson’s disease (PD), they require a large amount of data for training. It is often difficult to collect a large population of patient data to support the ML research, and the ground truth of lesion is also unknown. This paper leverages a generative adversarial network (GAN) to generate digital brain phantoms for training ML-based PD SPECT algorithms. A total of 594 PET 3D brain models from 155 patients (113 male and 42 female) were reviewed and 1597 2D slices containing the full or a portion of the striatum were selected. Corresponding attenuation maps were also generated based on these images. The data were then used to develop a GAN for generating 2D brain phantoms, where each phantom consisted of a radioactivity image and the corresponding attenuation map. Statistical methods including histogram, Fréchet distance, and structural similarity were used to evaluate the generator based on 10,000 generated phantoms. When the generated phantoms and training dataset were both passed to the discriminator, similar normal distributions were obtained, which indicated the discriminator was unable to distinguish the generated phantoms from the training datasets. The generated digital phantoms can be used for 2D SPECT simulation and serve as the ground truth to develop ML-based reconstruction algorithms. The cumulated experience from this work also laid the foundation for building a 3D GAN for the same application.
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spelling pubmed-94068942022-08-26 Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging Shao, Wenyi Leung, Kevin H. Xu, Jingyan Coughlin, Jennifer M. Pomper, Martin G. Du, Yong Diagnostics (Basel) Article While machine learning (ML) methods may significantly improve image quality for SPECT imaging for the diagnosis and monitoring of Parkinson’s disease (PD), they require a large amount of data for training. It is often difficult to collect a large population of patient data to support the ML research, and the ground truth of lesion is also unknown. This paper leverages a generative adversarial network (GAN) to generate digital brain phantoms for training ML-based PD SPECT algorithms. A total of 594 PET 3D brain models from 155 patients (113 male and 42 female) were reviewed and 1597 2D slices containing the full or a portion of the striatum were selected. Corresponding attenuation maps were also generated based on these images. The data were then used to develop a GAN for generating 2D brain phantoms, where each phantom consisted of a radioactivity image and the corresponding attenuation map. Statistical methods including histogram, Fréchet distance, and structural similarity were used to evaluate the generator based on 10,000 generated phantoms. When the generated phantoms and training dataset were both passed to the discriminator, similar normal distributions were obtained, which indicated the discriminator was unable to distinguish the generated phantoms from the training datasets. The generated digital phantoms can be used for 2D SPECT simulation and serve as the ground truth to develop ML-based reconstruction algorithms. The cumulated experience from this work also laid the foundation for building a 3D GAN for the same application. MDPI 2022-08-12 /pmc/articles/PMC9406894/ /pubmed/36010295 http://dx.doi.org/10.3390/diagnostics12081945 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shao, Wenyi
Leung, Kevin H.
Xu, Jingyan
Coughlin, Jennifer M.
Pomper, Martin G.
Du, Yong
Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title_full Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title_fullStr Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title_full_unstemmed Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title_short Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging
title_sort generation of digital brain phantom for machine learning application of dopamine transporter radionuclide imaging
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406894/
https://www.ncbi.nlm.nih.gov/pubmed/36010295
http://dx.doi.org/10.3390/diagnostics12081945
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