Cargando…

Big Data in Laboratory Medicine—FAIR Quality for AI?

Laboratory medicine is a digital science. Every large hospital produces a wealth of data each day—from simple numerical results from, e.g., sodium measurements to highly complex output of “-omics” analyses, as well as quality control results and metadata. Processing, connecting, storing, and orderin...

Descripción completa

Detalles Bibliográficos
Autores principales: Blatter, Tobias Ueli, Witte, Harald, Nakas, Christos Theodoros, Leichtle, Alexander Benedikt
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406962/
https://www.ncbi.nlm.nih.gov/pubmed/36010273
http://dx.doi.org/10.3390/diagnostics12081923
_version_ 1784774249554116608
author Blatter, Tobias Ueli
Witte, Harald
Nakas, Christos Theodoros
Leichtle, Alexander Benedikt
author_facet Blatter, Tobias Ueli
Witte, Harald
Nakas, Christos Theodoros
Leichtle, Alexander Benedikt
author_sort Blatter, Tobias Ueli
collection PubMed
description Laboratory medicine is a digital science. Every large hospital produces a wealth of data each day—from simple numerical results from, e.g., sodium measurements to highly complex output of “-omics” analyses, as well as quality control results and metadata. Processing, connecting, storing, and ordering extensive parts of these individual data requires Big Data techniques. Whereas novel technologies such as artificial intelligence and machine learning have exciting application for the augmentation of laboratory medicine, the Big Data concept remains fundamental for any sophisticated data analysis in large databases. To make laboratory medicine data optimally usable for clinical and research purposes, they need to be FAIR: findable, accessible, interoperable, and reusable. This can be achieved, for example, by automated recording, connection of devices, efficient ETL (Extract, Transform, Load) processes, careful data governance, and modern data security solutions. Enriched with clinical data, laboratory medicine data allow a gain in pathophysiological insights, can improve patient care, or can be used to develop reference intervals for diagnostic purposes. Nevertheless, Big Data in laboratory medicine do not come without challenges: the growing number of analyses and data derived from them is a demanding task to be taken care of. Laboratory medicine experts are and will be needed to drive this development, take an active role in the ongoing digitalization, and provide guidance for their clinical colleagues engaging with the laboratory data in research.
format Online
Article
Text
id pubmed-9406962
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94069622022-08-26 Big Data in Laboratory Medicine—FAIR Quality for AI? Blatter, Tobias Ueli Witte, Harald Nakas, Christos Theodoros Leichtle, Alexander Benedikt Diagnostics (Basel) Review Laboratory medicine is a digital science. Every large hospital produces a wealth of data each day—from simple numerical results from, e.g., sodium measurements to highly complex output of “-omics” analyses, as well as quality control results and metadata. Processing, connecting, storing, and ordering extensive parts of these individual data requires Big Data techniques. Whereas novel technologies such as artificial intelligence and machine learning have exciting application for the augmentation of laboratory medicine, the Big Data concept remains fundamental for any sophisticated data analysis in large databases. To make laboratory medicine data optimally usable for clinical and research purposes, they need to be FAIR: findable, accessible, interoperable, and reusable. This can be achieved, for example, by automated recording, connection of devices, efficient ETL (Extract, Transform, Load) processes, careful data governance, and modern data security solutions. Enriched with clinical data, laboratory medicine data allow a gain in pathophysiological insights, can improve patient care, or can be used to develop reference intervals for diagnostic purposes. Nevertheless, Big Data in laboratory medicine do not come without challenges: the growing number of analyses and data derived from them is a demanding task to be taken care of. Laboratory medicine experts are and will be needed to drive this development, take an active role in the ongoing digitalization, and provide guidance for their clinical colleagues engaging with the laboratory data in research. MDPI 2022-08-09 /pmc/articles/PMC9406962/ /pubmed/36010273 http://dx.doi.org/10.3390/diagnostics12081923 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Blatter, Tobias Ueli
Witte, Harald
Nakas, Christos Theodoros
Leichtle, Alexander Benedikt
Big Data in Laboratory Medicine—FAIR Quality for AI?
title Big Data in Laboratory Medicine—FAIR Quality for AI?
title_full Big Data in Laboratory Medicine—FAIR Quality for AI?
title_fullStr Big Data in Laboratory Medicine—FAIR Quality for AI?
title_full_unstemmed Big Data in Laboratory Medicine—FAIR Quality for AI?
title_short Big Data in Laboratory Medicine—FAIR Quality for AI?
title_sort big data in laboratory medicine—fair quality for ai?
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9406962/
https://www.ncbi.nlm.nih.gov/pubmed/36010273
http://dx.doi.org/10.3390/diagnostics12081923
work_keys_str_mv AT blattertobiasueli bigdatainlaboratorymedicinefairqualityforai
AT witteharald bigdatainlaboratorymedicinefairqualityforai
AT nakaschristostheodoros bigdatainlaboratorymedicinefairqualityforai
AT leichtlealexanderbenedikt bigdatainlaboratorymedicinefairqualityforai