Cargando…

Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients

Variants of the DEAD-Box Helicase 20 (DDX20), one of the microRNAs (miRNAs) machinery genes, can modulate miRNA/target gene expressions and, hence, influence cancer susceptibility and prognosis. Here, we aimed to unravel the association of DDX20 rs197412 T/C variant with colon cancer risk and/or pro...

Descripción completa

Detalles Bibliográficos
Autores principales: Hobani, Yahya H., Almars, Amany I., Alelwani, Walla, Toraih, Eman A., Nemr, Nader A., Shaalan, Aly A. M., Fawzy, Manal S., Attallah, Samy M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407271/
https://www.ncbi.nlm.nih.gov/pubmed/36011315
http://dx.doi.org/10.3390/genes13081404
_version_ 1784774324064878592
author Hobani, Yahya H.
Almars, Amany I.
Alelwani, Walla
Toraih, Eman A.
Nemr, Nader A.
Shaalan, Aly A. M.
Fawzy, Manal S.
Attallah, Samy M.
author_facet Hobani, Yahya H.
Almars, Amany I.
Alelwani, Walla
Toraih, Eman A.
Nemr, Nader A.
Shaalan, Aly A. M.
Fawzy, Manal S.
Attallah, Samy M.
author_sort Hobani, Yahya H.
collection PubMed
description Variants of the DEAD-Box Helicase 20 (DDX20), one of the microRNAs (miRNAs) machinery genes, can modulate miRNA/target gene expressions and, hence, influence cancer susceptibility and prognosis. Here, we aimed to unravel the association of DDX20 rs197412 T/C variant with colon cancer risk and/or prognosis in paired samples of 122 colon cancer and non-cancer tissue specimens by TaqMan allelic discrimination analysis. Structural/functional bioinformatic analyses were carried out, followed by a meta-analysis. We found that the T allele was more frequent in cancer tissues compared to control tissues (60.2% vs. 35.7%, p < 0.001). Furthermore, the T variant was highly frequent in primary tumors with evidence of recurrence (73% vs. 47.5%, p < 0.001). Genetic association models, adjusted by age and sex, revealed that the T allele was associated with a higher risk of developing colon cancer under heterozygote (T/C vs. C/C: OR = 2.35, 95%CI = 1.25–4.44, p < 0.001), homozygote (T/T vs. C/C: OR = 7.6, 95%CI = 3.5–16.8, p < 0.001), dominant (T/C-T/T vs. C/C: OR = 3.4, 95%CI = 1.87–8.5, p < 0.001), and recessive (T/T vs. C/C-T/C: OR = 4.42, 95%CI = 2.29–8.54, p = 0.001) models. Kaplan–Meier survival curves showed the shift in the C > T allele to be associated with poor disease-free survival. After adjusting covariates using a multivariate cox regression model, patients harboring C > T somatic mutation were 3.5 times more likely to develop a recurrence (p < 0.001). A meta-analysis of nine studies (including ours) showed a higher risk of CRC (81%) in subjects harboring the T/T genotype than in T/C + C/C genotypes, supporting the potential clinical utility of the specified study variant as a biomarker for risk stratification in CRC cases. However, results were not significant in non-colorectal cancers. In conclusion, the DDX20 rs197412 variant is associated with increased colon cancer risk and a higher likelihood of recurrence in the study population.
format Online
Article
Text
id pubmed-9407271
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94072712022-08-26 Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients Hobani, Yahya H. Almars, Amany I. Alelwani, Walla Toraih, Eman A. Nemr, Nader A. Shaalan, Aly A. M. Fawzy, Manal S. Attallah, Samy M. Genes (Basel) Article Variants of the DEAD-Box Helicase 20 (DDX20), one of the microRNAs (miRNAs) machinery genes, can modulate miRNA/target gene expressions and, hence, influence cancer susceptibility and prognosis. Here, we aimed to unravel the association of DDX20 rs197412 T/C variant with colon cancer risk and/or prognosis in paired samples of 122 colon cancer and non-cancer tissue specimens by TaqMan allelic discrimination analysis. Structural/functional bioinformatic analyses were carried out, followed by a meta-analysis. We found that the T allele was more frequent in cancer tissues compared to control tissues (60.2% vs. 35.7%, p < 0.001). Furthermore, the T variant was highly frequent in primary tumors with evidence of recurrence (73% vs. 47.5%, p < 0.001). Genetic association models, adjusted by age and sex, revealed that the T allele was associated with a higher risk of developing colon cancer under heterozygote (T/C vs. C/C: OR = 2.35, 95%CI = 1.25–4.44, p < 0.001), homozygote (T/T vs. C/C: OR = 7.6, 95%CI = 3.5–16.8, p < 0.001), dominant (T/C-T/T vs. C/C: OR = 3.4, 95%CI = 1.87–8.5, p < 0.001), and recessive (T/T vs. C/C-T/C: OR = 4.42, 95%CI = 2.29–8.54, p = 0.001) models. Kaplan–Meier survival curves showed the shift in the C > T allele to be associated with poor disease-free survival. After adjusting covariates using a multivariate cox regression model, patients harboring C > T somatic mutation were 3.5 times more likely to develop a recurrence (p < 0.001). A meta-analysis of nine studies (including ours) showed a higher risk of CRC (81%) in subjects harboring the T/T genotype than in T/C + C/C genotypes, supporting the potential clinical utility of the specified study variant as a biomarker for risk stratification in CRC cases. However, results were not significant in non-colorectal cancers. In conclusion, the DDX20 rs197412 variant is associated with increased colon cancer risk and a higher likelihood of recurrence in the study population. MDPI 2022-08-07 /pmc/articles/PMC9407271/ /pubmed/36011315 http://dx.doi.org/10.3390/genes13081404 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hobani, Yahya H.
Almars, Amany I.
Alelwani, Walla
Toraih, Eman A.
Nemr, Nader A.
Shaalan, Aly A. M.
Fawzy, Manal S.
Attallah, Samy M.
Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title_full Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title_fullStr Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title_full_unstemmed Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title_short Genetic Variation in DEAD-Box Helicase 20 as a Putative Marker of Recurrence in Propensity-Matched Colon Cancer Patients
title_sort genetic variation in dead-box helicase 20 as a putative marker of recurrence in propensity-matched colon cancer patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407271/
https://www.ncbi.nlm.nih.gov/pubmed/36011315
http://dx.doi.org/10.3390/genes13081404
work_keys_str_mv AT hobaniyahyah geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT almarsamanyi geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT alelwaniwalla geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT toraihemana geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT nemrnadera geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT shaalanalyam geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT fawzymanals geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients
AT attallahsamym geneticvariationindeadboxhelicase20asaputativemarkerofrecurrenceinpropensitymatchedcoloncancerpatients