Cargando…

Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer

Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (...

Descripción completa

Detalles Bibliográficos
Autores principales: Le, Tan Minh, Nguyen, Hong Duc Thi, Lee, Eunmi, Lee, Donghyeon, Choi, Ye Seul, Cho, Junghwan, Park, Nora Jee-Young, Han, Hyung Soo, Chong, Gun Oh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407871/
https://www.ncbi.nlm.nih.gov/pubmed/36011316
http://dx.doi.org/10.3390/genes13081405
_version_ 1784774468882661376
author Le, Tan Minh
Nguyen, Hong Duc Thi
Lee, Eunmi
Lee, Donghyeon
Choi, Ye Seul
Cho, Junghwan
Park, Nora Jee-Young
Han, Hyung Soo
Chong, Gun Oh
author_facet Le, Tan Minh
Nguyen, Hong Duc Thi
Lee, Eunmi
Lee, Donghyeon
Choi, Ye Seul
Cho, Junghwan
Park, Nora Jee-Young
Han, Hyung Soo
Chong, Gun Oh
author_sort Le, Tan Minh
collection PubMed
description Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (TIME) in uterine cervical cancer (CC). Therefore, this study aimed to identify the transcriptomic immune profiles related to TB status and further provide robust medical evidence for clinical application. In our study, total RNA was extracted and sequenced from 21 CC tissue specimens. As such, 1494 differentially expressed genes (DEGs) between the high- and low-TB groups were identified by DESeq2. After intersecting the list of DEGs and public immune genes, we selected 106 immune-related DEGs. Then, hub genes were obtained using Least Absolute Shrinkage and Selection Operator regression. Finally, the correlation between the hub genes and immune cell types was analyzed and four candidate genes were identified (one upregulated (FCGR3B) and three downregulated (ROBO2, OPRL1, and NR4A2) genes). These gene expression levels were highly accurate in predicting TB status (area under the curve >80%). Interestingly, FCGR3B is a hub gene of several innate immune pathways; its expression significantly differed in the overall survival analysis (p = 0.0016). In conclusion, FCGR3B, ROBO2, OPRL1, and NR4A2 expression can strongly interfere with TB growth and replace TB to stratify CC patients.
format Online
Article
Text
id pubmed-9407871
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94078712022-08-26 Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer Le, Tan Minh Nguyen, Hong Duc Thi Lee, Eunmi Lee, Donghyeon Choi, Ye Seul Cho, Junghwan Park, Nora Jee-Young Han, Hyung Soo Chong, Gun Oh Genes (Basel) Article Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (TIME) in uterine cervical cancer (CC). Therefore, this study aimed to identify the transcriptomic immune profiles related to TB status and further provide robust medical evidence for clinical application. In our study, total RNA was extracted and sequenced from 21 CC tissue specimens. As such, 1494 differentially expressed genes (DEGs) between the high- and low-TB groups were identified by DESeq2. After intersecting the list of DEGs and public immune genes, we selected 106 immune-related DEGs. Then, hub genes were obtained using Least Absolute Shrinkage and Selection Operator regression. Finally, the correlation between the hub genes and immune cell types was analyzed and four candidate genes were identified (one upregulated (FCGR3B) and three downregulated (ROBO2, OPRL1, and NR4A2) genes). These gene expression levels were highly accurate in predicting TB status (area under the curve >80%). Interestingly, FCGR3B is a hub gene of several innate immune pathways; its expression significantly differed in the overall survival analysis (p = 0.0016). In conclusion, FCGR3B, ROBO2, OPRL1, and NR4A2 expression can strongly interfere with TB growth and replace TB to stratify CC patients. MDPI 2022-08-07 /pmc/articles/PMC9407871/ /pubmed/36011316 http://dx.doi.org/10.3390/genes13081405 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Le, Tan Minh
Nguyen, Hong Duc Thi
Lee, Eunmi
Lee, Donghyeon
Choi, Ye Seul
Cho, Junghwan
Park, Nora Jee-Young
Han, Hyung Soo
Chong, Gun Oh
Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title_full Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title_fullStr Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title_full_unstemmed Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title_short Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
title_sort transcriptomic immune profiles can represent the tumor immune microenvironment related to the tumor budding histology in uterine cervical cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407871/
https://www.ncbi.nlm.nih.gov/pubmed/36011316
http://dx.doi.org/10.3390/genes13081405
work_keys_str_mv AT letanminh transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT nguyenhongducthi transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT leeeunmi transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT leedonghyeon transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT choiyeseul transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT chojunghwan transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT parknorajeeyoung transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT hanhyungsoo transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer
AT chonggunoh transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer