Cargando…
Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer
Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407871/ https://www.ncbi.nlm.nih.gov/pubmed/36011316 http://dx.doi.org/10.3390/genes13081405 |
_version_ | 1784774468882661376 |
---|---|
author | Le, Tan Minh Nguyen, Hong Duc Thi Lee, Eunmi Lee, Donghyeon Choi, Ye Seul Cho, Junghwan Park, Nora Jee-Young Han, Hyung Soo Chong, Gun Oh |
author_facet | Le, Tan Minh Nguyen, Hong Duc Thi Lee, Eunmi Lee, Donghyeon Choi, Ye Seul Cho, Junghwan Park, Nora Jee-Young Han, Hyung Soo Chong, Gun Oh |
author_sort | Le, Tan Minh |
collection | PubMed |
description | Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (TIME) in uterine cervical cancer (CC). Therefore, this study aimed to identify the transcriptomic immune profiles related to TB status and further provide robust medical evidence for clinical application. In our study, total RNA was extracted and sequenced from 21 CC tissue specimens. As such, 1494 differentially expressed genes (DEGs) between the high- and low-TB groups were identified by DESeq2. After intersecting the list of DEGs and public immune genes, we selected 106 immune-related DEGs. Then, hub genes were obtained using Least Absolute Shrinkage and Selection Operator regression. Finally, the correlation between the hub genes and immune cell types was analyzed and four candidate genes were identified (one upregulated (FCGR3B) and three downregulated (ROBO2, OPRL1, and NR4A2) genes). These gene expression levels were highly accurate in predicting TB status (area under the curve >80%). Interestingly, FCGR3B is a hub gene of several innate immune pathways; its expression significantly differed in the overall survival analysis (p = 0.0016). In conclusion, FCGR3B, ROBO2, OPRL1, and NR4A2 expression can strongly interfere with TB growth and replace TB to stratify CC patients. |
format | Online Article Text |
id | pubmed-9407871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94078712022-08-26 Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer Le, Tan Minh Nguyen, Hong Duc Thi Lee, Eunmi Lee, Donghyeon Choi, Ye Seul Cho, Junghwan Park, Nora Jee-Young Han, Hyung Soo Chong, Gun Oh Genes (Basel) Article Tumor budding (TB) histology has become a critical biomarker for several solid cancers. Despite the accumulating evidence for the association of TB histology with poor prognosis, the biological characteristics of TB are little known about in the context related to the tumor immune microenvironment (TIME) in uterine cervical cancer (CC). Therefore, this study aimed to identify the transcriptomic immune profiles related to TB status and further provide robust medical evidence for clinical application. In our study, total RNA was extracted and sequenced from 21 CC tissue specimens. As such, 1494 differentially expressed genes (DEGs) between the high- and low-TB groups were identified by DESeq2. After intersecting the list of DEGs and public immune genes, we selected 106 immune-related DEGs. Then, hub genes were obtained using Least Absolute Shrinkage and Selection Operator regression. Finally, the correlation between the hub genes and immune cell types was analyzed and four candidate genes were identified (one upregulated (FCGR3B) and three downregulated (ROBO2, OPRL1, and NR4A2) genes). These gene expression levels were highly accurate in predicting TB status (area under the curve >80%). Interestingly, FCGR3B is a hub gene of several innate immune pathways; its expression significantly differed in the overall survival analysis (p = 0.0016). In conclusion, FCGR3B, ROBO2, OPRL1, and NR4A2 expression can strongly interfere with TB growth and replace TB to stratify CC patients. MDPI 2022-08-07 /pmc/articles/PMC9407871/ /pubmed/36011316 http://dx.doi.org/10.3390/genes13081405 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Le, Tan Minh Nguyen, Hong Duc Thi Lee, Eunmi Lee, Donghyeon Choi, Ye Seul Cho, Junghwan Park, Nora Jee-Young Han, Hyung Soo Chong, Gun Oh Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title | Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title_full | Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title_fullStr | Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title_full_unstemmed | Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title_short | Transcriptomic Immune Profiles Can Represent the Tumor Immune Microenvironment Related to the Tumor Budding Histology in Uterine Cervical Cancer |
title_sort | transcriptomic immune profiles can represent the tumor immune microenvironment related to the tumor budding histology in uterine cervical cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9407871/ https://www.ncbi.nlm.nih.gov/pubmed/36011316 http://dx.doi.org/10.3390/genes13081405 |
work_keys_str_mv | AT letanminh transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT nguyenhongducthi transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT leeeunmi transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT leedonghyeon transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT choiyeseul transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT chojunghwan transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT parknorajeeyoung transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT hanhyungsoo transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer AT chonggunoh transcriptomicimmuneprofilescanrepresentthetumorimmunemicroenvironmentrelatedtothetumorbuddinghistologyinuterinecervicalcancer |