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Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9408017/ https://www.ncbi.nlm.nih.gov/pubmed/36011360 http://dx.doi.org/10.3390/genes13081449 |
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author | Jiang, Jin-Jin Li, Na Chen, Wu-Jun Wang, Yue Rong, Hao Xie, Tao Wang, You-Ping |
author_facet | Jiang, Jin-Jin Li, Na Chen, Wu-Jun Wang, Yue Rong, Hao Xie, Tao Wang, You-Ping |
author_sort | Jiang, Jin-Jin |
collection | PubMed |
description | The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The BnARRs experienced gene expansion and loss during genome polyploidization and were classified into seven groups. Whole-genome duplication (WGD) and segmental duplication were the main forces driving type-B ARR expansion in B. napus. Several BnARRs with specific expression patterns during rapeseed development were identified, including BnARR12/14/18/23/33. Moreover, we found the type-B BnARRs were involved in rapeseed development and stress responses, through participating in cytokinin and ABA signaling pathways. This study revealed the origin, evolutionary history, and expression pattern of type-B ARRs in B. napus and will be helpful to the functional characterization of BnARRs. |
format | Online Article Text |
id | pubmed-9408017 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94080172022-08-26 Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus Jiang, Jin-Jin Li, Na Chen, Wu-Jun Wang, Yue Rong, Hao Xie, Tao Wang, You-Ping Genes (Basel) Article The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The BnARRs experienced gene expansion and loss during genome polyploidization and were classified into seven groups. Whole-genome duplication (WGD) and segmental duplication were the main forces driving type-B ARR expansion in B. napus. Several BnARRs with specific expression patterns during rapeseed development were identified, including BnARR12/14/18/23/33. Moreover, we found the type-B BnARRs were involved in rapeseed development and stress responses, through participating in cytokinin and ABA signaling pathways. This study revealed the origin, evolutionary history, and expression pattern of type-B ARRs in B. napus and will be helpful to the functional characterization of BnARRs. MDPI 2022-08-15 /pmc/articles/PMC9408017/ /pubmed/36011360 http://dx.doi.org/10.3390/genes13081449 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jiang, Jin-Jin Li, Na Chen, Wu-Jun Wang, Yue Rong, Hao Xie, Tao Wang, You-Ping Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title | Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title_full | Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title_fullStr | Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title_full_unstemmed | Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title_short | Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus |
title_sort | genome-wide analysis of the type-b authentic response regulator gene family in brassica napus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9408017/ https://www.ncbi.nlm.nih.gov/pubmed/36011360 http://dx.doi.org/10.3390/genes13081449 |
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