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Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus

The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The...

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Autores principales: Jiang, Jin-Jin, Li, Na, Chen, Wu-Jun, Wang, Yue, Rong, Hao, Xie, Tao, Wang, You-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9408017/
https://www.ncbi.nlm.nih.gov/pubmed/36011360
http://dx.doi.org/10.3390/genes13081449
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author Jiang, Jin-Jin
Li, Na
Chen, Wu-Jun
Wang, Yue
Rong, Hao
Xie, Tao
Wang, You-Ping
author_facet Jiang, Jin-Jin
Li, Na
Chen, Wu-Jun
Wang, Yue
Rong, Hao
Xie, Tao
Wang, You-Ping
author_sort Jiang, Jin-Jin
collection PubMed
description The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The BnARRs experienced gene expansion and loss during genome polyploidization and were classified into seven groups. Whole-genome duplication (WGD) and segmental duplication were the main forces driving type-B ARR expansion in B. napus. Several BnARRs with specific expression patterns during rapeseed development were identified, including BnARR12/14/18/23/33. Moreover, we found the type-B BnARRs were involved in rapeseed development and stress responses, through participating in cytokinin and ABA signaling pathways. This study revealed the origin, evolutionary history, and expression pattern of type-B ARRs in B. napus and will be helpful to the functional characterization of BnARRs.
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spelling pubmed-94080172022-08-26 Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus Jiang, Jin-Jin Li, Na Chen, Wu-Jun Wang, Yue Rong, Hao Xie, Tao Wang, You-Ping Genes (Basel) Article The type-B authentic response regulators (type-B ARRs) are positive regulators of cytokinin signaling and involved in plant growth and stress responses. In this study, we used bioinformatics, RNA-seq, and qPCR to study the phylogenetic and expression pattern of 35 type-B ARRs in Brassica napus. The BnARRs experienced gene expansion and loss during genome polyploidization and were classified into seven groups. Whole-genome duplication (WGD) and segmental duplication were the main forces driving type-B ARR expansion in B. napus. Several BnARRs with specific expression patterns during rapeseed development were identified, including BnARR12/14/18/23/33. Moreover, we found the type-B BnARRs were involved in rapeseed development and stress responses, through participating in cytokinin and ABA signaling pathways. This study revealed the origin, evolutionary history, and expression pattern of type-B ARRs in B. napus and will be helpful to the functional characterization of BnARRs. MDPI 2022-08-15 /pmc/articles/PMC9408017/ /pubmed/36011360 http://dx.doi.org/10.3390/genes13081449 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jiang, Jin-Jin
Li, Na
Chen, Wu-Jun
Wang, Yue
Rong, Hao
Xie, Tao
Wang, You-Ping
Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title_full Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title_fullStr Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title_full_unstemmed Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title_short Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus
title_sort genome-wide analysis of the type-b authentic response regulator gene family in brassica napus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9408017/
https://www.ncbi.nlm.nih.gov/pubmed/36011360
http://dx.doi.org/10.3390/genes13081449
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