Cargando…

Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii

Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, whic...

Descripción completa

Detalles Bibliográficos
Autores principales: Vasilev, Ruslan, Gunitseva, Natalia, Shebanova, Regina, Korzhenkov, Aleksei, Vlaskina, Anna, Evteeva, Marta, Polushkina, Irina, Nikitchina, Natalia, Toshchakov, Stepan, Kamenski, Piotr, Patrushev, Maxim, Mazunin, Ilya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9409102/
https://www.ncbi.nlm.nih.gov/pubmed/36012553
http://dx.doi.org/10.3390/ijms23169289
_version_ 1784774768319266816
author Vasilev, Ruslan
Gunitseva, Natalia
Shebanova, Regina
Korzhenkov, Aleksei
Vlaskina, Anna
Evteeva, Marta
Polushkina, Irina
Nikitchina, Natalia
Toshchakov, Stepan
Kamenski, Piotr
Patrushev, Maxim
Mazunin, Ilya
author_facet Vasilev, Ruslan
Gunitseva, Natalia
Shebanova, Regina
Korzhenkov, Aleksei
Vlaskina, Anna
Evteeva, Marta
Polushkina, Irina
Nikitchina, Natalia
Toshchakov, Stepan
Kamenski, Piotr
Patrushev, Maxim
Mazunin, Ilya
author_sort Vasilev, Ruslan
collection PubMed
description Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, which is able to efficiently cleave target DNA templates, using the particularly high accessibility of PAM 5′-YYN and a relatively wide temperature range from 20 °C to 42 °C. In comparison to Acidaminococcus sp. (AsCas12a) nuclease, RbCas12a is capable of processing DNA more efficiently, and can be active upon being charged by spacer-only RNA at lower concentrations in vitro. We show that the human-optimized RbCas12a nuclease is also active in mammalian cells, and can be applied for efficient deletion incorporation into the human genome. Given the advantageous properties of RbCas12a, this enzyme shows potential for clinical and biotechnological applications within the field of genome editing.
format Online
Article
Text
id pubmed-9409102
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94091022022-08-26 Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii Vasilev, Ruslan Gunitseva, Natalia Shebanova, Regina Korzhenkov, Aleksei Vlaskina, Anna Evteeva, Marta Polushkina, Irina Nikitchina, Natalia Toshchakov, Stepan Kamenski, Piotr Patrushev, Maxim Mazunin, Ilya Int J Mol Sci Article Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, which is able to efficiently cleave target DNA templates, using the particularly high accessibility of PAM 5′-YYN and a relatively wide temperature range from 20 °C to 42 °C. In comparison to Acidaminococcus sp. (AsCas12a) nuclease, RbCas12a is capable of processing DNA more efficiently, and can be active upon being charged by spacer-only RNA at lower concentrations in vitro. We show that the human-optimized RbCas12a nuclease is also active in mammalian cells, and can be applied for efficient deletion incorporation into the human genome. Given the advantageous properties of RbCas12a, this enzyme shows potential for clinical and biotechnological applications within the field of genome editing. MDPI 2022-08-18 /pmc/articles/PMC9409102/ /pubmed/36012553 http://dx.doi.org/10.3390/ijms23169289 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Vasilev, Ruslan
Gunitseva, Natalia
Shebanova, Regina
Korzhenkov, Aleksei
Vlaskina, Anna
Evteeva, Marta
Polushkina, Irina
Nikitchina, Natalia
Toshchakov, Stepan
Kamenski, Piotr
Patrushev, Maxim
Mazunin, Ilya
Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title_full Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title_fullStr Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title_full_unstemmed Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title_short Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
title_sort targeted modification of mammalian dna by a novel type v cas12a endonuclease from ruminococcus bromii
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9409102/
https://www.ncbi.nlm.nih.gov/pubmed/36012553
http://dx.doi.org/10.3390/ijms23169289
work_keys_str_mv AT vasilevruslan targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT gunitsevanatalia targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT shebanovaregina targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT korzhenkovaleksei targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT vlaskinaanna targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT evteevamarta targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT polushkinairina targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT nikitchinanatalia targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT toshchakovstepan targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT kamenskipiotr targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT patrushevmaxim targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii
AT mazuninilya targetedmodificationofmammaliandnabyanoveltypevcas12aendonucleasefromruminococcusbromii