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Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii
Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, whic...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9409102/ https://www.ncbi.nlm.nih.gov/pubmed/36012553 http://dx.doi.org/10.3390/ijms23169289 |
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author | Vasilev, Ruslan Gunitseva, Natalia Shebanova, Regina Korzhenkov, Aleksei Vlaskina, Anna Evteeva, Marta Polushkina, Irina Nikitchina, Natalia Toshchakov, Stepan Kamenski, Piotr Patrushev, Maxim Mazunin, Ilya |
author_facet | Vasilev, Ruslan Gunitseva, Natalia Shebanova, Regina Korzhenkov, Aleksei Vlaskina, Anna Evteeva, Marta Polushkina, Irina Nikitchina, Natalia Toshchakov, Stepan Kamenski, Piotr Patrushev, Maxim Mazunin, Ilya |
author_sort | Vasilev, Ruslan |
collection | PubMed |
description | Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, which is able to efficiently cleave target DNA templates, using the particularly high accessibility of PAM 5′-YYN and a relatively wide temperature range from 20 °C to 42 °C. In comparison to Acidaminococcus sp. (AsCas12a) nuclease, RbCas12a is capable of processing DNA more efficiently, and can be active upon being charged by spacer-only RNA at lower concentrations in vitro. We show that the human-optimized RbCas12a nuclease is also active in mammalian cells, and can be applied for efficient deletion incorporation into the human genome. Given the advantageous properties of RbCas12a, this enzyme shows potential for clinical and biotechnological applications within the field of genome editing. |
format | Online Article Text |
id | pubmed-9409102 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94091022022-08-26 Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii Vasilev, Ruslan Gunitseva, Natalia Shebanova, Regina Korzhenkov, Aleksei Vlaskina, Anna Evteeva, Marta Polushkina, Irina Nikitchina, Natalia Toshchakov, Stepan Kamenski, Piotr Patrushev, Maxim Mazunin, Ilya Int J Mol Sci Article Type V Cas12a nucleases are DNA editors working in a wide temperature range and using expanded protospacer-adjacent motifs (PAMs). Though they are widely used, there is still a demand for discovering new ones. Here, we demonstrate a novel ortholog from Ruminococcus bromii sp. entitled RbCas12a, which is able to efficiently cleave target DNA templates, using the particularly high accessibility of PAM 5′-YYN and a relatively wide temperature range from 20 °C to 42 °C. In comparison to Acidaminococcus sp. (AsCas12a) nuclease, RbCas12a is capable of processing DNA more efficiently, and can be active upon being charged by spacer-only RNA at lower concentrations in vitro. We show that the human-optimized RbCas12a nuclease is also active in mammalian cells, and can be applied for efficient deletion incorporation into the human genome. Given the advantageous properties of RbCas12a, this enzyme shows potential for clinical and biotechnological applications within the field of genome editing. MDPI 2022-08-18 /pmc/articles/PMC9409102/ /pubmed/36012553 http://dx.doi.org/10.3390/ijms23169289 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Vasilev, Ruslan Gunitseva, Natalia Shebanova, Regina Korzhenkov, Aleksei Vlaskina, Anna Evteeva, Marta Polushkina, Irina Nikitchina, Natalia Toshchakov, Stepan Kamenski, Piotr Patrushev, Maxim Mazunin, Ilya Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title | Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title_full | Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title_fullStr | Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title_full_unstemmed | Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title_short | Targeted Modification of Mammalian DNA by a Novel Type V Cas12a Endonuclease from Ruminococcus bromii |
title_sort | targeted modification of mammalian dna by a novel type v cas12a endonuclease from ruminococcus bromii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9409102/ https://www.ncbi.nlm.nih.gov/pubmed/36012553 http://dx.doi.org/10.3390/ijms23169289 |
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