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A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme

The RNA world hypothesis suggests that chemical networks consisting of functional RNA molecules could have constructed a primitive life-like system leading a first living system. The chemical evolution scenario of RNA molecules should be consistent with the Hadean Earth environment. We have demonstr...

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Autores principales: Kawamura, Kunio, Ogawa, Mari, Konagaya, Noriko, Maruoka, Yoshimi, Lambert, Jean-François, Ter-Ovanessian, Louis M. P., Vergne, Jacques, Hervé, Guy, Maurel, Marie-Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410335/
https://www.ncbi.nlm.nih.gov/pubmed/36013404
http://dx.doi.org/10.3390/life12081224
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author Kawamura, Kunio
Ogawa, Mari
Konagaya, Noriko
Maruoka, Yoshimi
Lambert, Jean-François
Ter-Ovanessian, Louis M. P.
Vergne, Jacques
Hervé, Guy
Maurel, Marie-Christine
author_facet Kawamura, Kunio
Ogawa, Mari
Konagaya, Noriko
Maruoka, Yoshimi
Lambert, Jean-François
Ter-Ovanessian, Louis M. P.
Vergne, Jacques
Hervé, Guy
Maurel, Marie-Christine
author_sort Kawamura, Kunio
collection PubMed
description The RNA world hypothesis suggests that chemical networks consisting of functional RNA molecules could have constructed a primitive life-like system leading a first living system. The chemical evolution scenario of RNA molecules should be consistent with the Hadean Earth environment. We have demonstrated the importance of the environment at both high temperature and high pressure, using different types of hydrothermal flow reactor systems and high-pressure equipment. In the present study, we have attempted to develop an alternative easy-to-implement method for high-pressure measurements and demonstrate that the system is applicable as an efficient research tool for high-pressure experiments at pressures up to 30 MPa. We demonstrate the usefulness of the system by detecting the high-pressure influence for the self-cleavage of avocado hammerhead ribozyme (ASBVd(−):HHR) at 45–65 °C. A kinetic analysis of the high-pressure behavior of ASBVd(−):HHR shows that the ribozyme is active at 30 MPa and its activity is sensitive to pressures between 0.1–30 MPa. The surprising finding that such a short ribozyme is effective for self-cleavage at a high pressure suggests the importance of pressure as a factor for selection of adaptable RNA molecules towards an RNA-based life-like system in the Hadean Earth environment deep in the ocean.
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spelling pubmed-94103352022-08-26 A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme Kawamura, Kunio Ogawa, Mari Konagaya, Noriko Maruoka, Yoshimi Lambert, Jean-François Ter-Ovanessian, Louis M. P. Vergne, Jacques Hervé, Guy Maurel, Marie-Christine Life (Basel) Article The RNA world hypothesis suggests that chemical networks consisting of functional RNA molecules could have constructed a primitive life-like system leading a first living system. The chemical evolution scenario of RNA molecules should be consistent with the Hadean Earth environment. We have demonstrated the importance of the environment at both high temperature and high pressure, using different types of hydrothermal flow reactor systems and high-pressure equipment. In the present study, we have attempted to develop an alternative easy-to-implement method for high-pressure measurements and demonstrate that the system is applicable as an efficient research tool for high-pressure experiments at pressures up to 30 MPa. We demonstrate the usefulness of the system by detecting the high-pressure influence for the self-cleavage of avocado hammerhead ribozyme (ASBVd(−):HHR) at 45–65 °C. A kinetic analysis of the high-pressure behavior of ASBVd(−):HHR shows that the ribozyme is active at 30 MPa and its activity is sensitive to pressures between 0.1–30 MPa. The surprising finding that such a short ribozyme is effective for self-cleavage at a high pressure suggests the importance of pressure as a factor for selection of adaptable RNA molecules towards an RNA-based life-like system in the Hadean Earth environment deep in the ocean. MDPI 2022-08-12 /pmc/articles/PMC9410335/ /pubmed/36013404 http://dx.doi.org/10.3390/life12081224 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kawamura, Kunio
Ogawa, Mari
Konagaya, Noriko
Maruoka, Yoshimi
Lambert, Jean-François
Ter-Ovanessian, Louis M. P.
Vergne, Jacques
Hervé, Guy
Maurel, Marie-Christine
A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title_full A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title_fullStr A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title_full_unstemmed A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title_short A High-Pressure, High-Temperature Flow Reactor Simulating the Hadean Earth Environment, with Application to the Pressure Dependence of the Cleavage of Avocado Viroid Hammerhead Ribozyme
title_sort high-pressure, high-temperature flow reactor simulating the hadean earth environment, with application to the pressure dependence of the cleavage of avocado viroid hammerhead ribozyme
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410335/
https://www.ncbi.nlm.nih.gov/pubmed/36013404
http://dx.doi.org/10.3390/life12081224
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