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Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic

To define appropriate planning scenarios for future pandemics of respiratory pathogens, it is important to understand the initial transmission dynamics of COVID-19 during 2020. Here, we fit an age-stratified compartmental model with a flexible underlying transmission term to daily COVID-19 death dat...

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Autores principales: Ben-Nun, Michal, Riley, Pete, Turtle, James, Riley, Steven
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410547/
https://www.ncbi.nlm.nih.gov/pubmed/35969627
http://dx.doi.org/10.1371/journal.pcbi.1010375
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author Ben-Nun, Michal
Riley, Pete
Turtle, James
Riley, Steven
author_facet Ben-Nun, Michal
Riley, Pete
Turtle, James
Riley, Steven
author_sort Ben-Nun, Michal
collection PubMed
description To define appropriate planning scenarios for future pandemics of respiratory pathogens, it is important to understand the initial transmission dynamics of COVID-19 during 2020. Here, we fit an age-stratified compartmental model with a flexible underlying transmission term to daily COVID-19 death data from states in the contiguous U.S. and to national and sub-national data from around the world. The daily death data of the first months of the COVID-19 pandemic was qualitatively categorized into one of four main profile types: “spring single-peak”, “summer single-peak”, “spring/summer two-peak” and “broad with shoulder”. We estimated a reproduction number R as a function of calendar time t(c) and as a function of time since the first death reported in that population (local pandemic time, t(p)). Contrary to the diversity of categories and range of magnitudes in death incidence profiles, the R(t(p)) profiles were much more homogeneous. We found that in both the contiguous U.S. and globally, the initial value of both R(t(c)) and R(t(p)) was substantial: at or above two. However, during the early months, pandemic time R(t(p)) decreased exponentially to a value that hovered around one. This decrease was accompanied by a reduction in the variance of R(t(p)). For calendar time R(t(c)), the decrease in magnitude was slower and non-exponential, with a smaller reduction in variance. Intriguingly, similar trends of exponential decrease and reduced variance were not observed in raw death data. Our findings suggest that the combination of specific government responses and spontaneous changes in behaviour ensured that transmissibility dropped, rather than remaining constant, during the initial phases of a pandemic. Future pandemic planning scenarios should include models that assume similar decreases in transmissibility, which lead to longer epidemics with lower peaks when compared with models based on constant transmissibility.
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spelling pubmed-94105472022-08-26 Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic Ben-Nun, Michal Riley, Pete Turtle, James Riley, Steven PLoS Comput Biol Research Article To define appropriate planning scenarios for future pandemics of respiratory pathogens, it is important to understand the initial transmission dynamics of COVID-19 during 2020. Here, we fit an age-stratified compartmental model with a flexible underlying transmission term to daily COVID-19 death data from states in the contiguous U.S. and to national and sub-national data from around the world. The daily death data of the first months of the COVID-19 pandemic was qualitatively categorized into one of four main profile types: “spring single-peak”, “summer single-peak”, “spring/summer two-peak” and “broad with shoulder”. We estimated a reproduction number R as a function of calendar time t(c) and as a function of time since the first death reported in that population (local pandemic time, t(p)). Contrary to the diversity of categories and range of magnitudes in death incidence profiles, the R(t(p)) profiles were much more homogeneous. We found that in both the contiguous U.S. and globally, the initial value of both R(t(c)) and R(t(p)) was substantial: at or above two. However, during the early months, pandemic time R(t(p)) decreased exponentially to a value that hovered around one. This decrease was accompanied by a reduction in the variance of R(t(p)). For calendar time R(t(c)), the decrease in magnitude was slower and non-exponential, with a smaller reduction in variance. Intriguingly, similar trends of exponential decrease and reduced variance were not observed in raw death data. Our findings suggest that the combination of specific government responses and spontaneous changes in behaviour ensured that transmissibility dropped, rather than remaining constant, during the initial phases of a pandemic. Future pandemic planning scenarios should include models that assume similar decreases in transmissibility, which lead to longer epidemics with lower peaks when compared with models based on constant transmissibility. Public Library of Science 2022-08-15 /pmc/articles/PMC9410547/ /pubmed/35969627 http://dx.doi.org/10.1371/journal.pcbi.1010375 Text en © 2022 Ben-Nun et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ben-Nun, Michal
Riley, Pete
Turtle, James
Riley, Steven
Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title_full Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title_fullStr Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title_full_unstemmed Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title_short Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
title_sort consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the covid-19 pandemic
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410547/
https://www.ncbi.nlm.nih.gov/pubmed/35969627
http://dx.doi.org/10.1371/journal.pcbi.1010375
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