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Identification of key genes and pathways associated with diabetes of the exocrine pancreas
This study aimed to identify potential essential genes and pathways in diabetes of the exocrine pancreas (DEP) and explore possible molecular mechanisms. The array dataset GSE76895 was downloaded from the Gene Expression Omnibus database. Pancreatic tissue samples from 20 Diabetes of the exocrine pa...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410602/ https://www.ncbi.nlm.nih.gov/pubmed/36042664 http://dx.doi.org/10.1097/MD.0000000000029781 |
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author | Yang, Zheng Li, Shengqi Liu, Huaying Su, Qisheng Li, Xiaohong Qiu, Yulin Mo, Wuning |
author_facet | Yang, Zheng Li, Shengqi Liu, Huaying Su, Qisheng Li, Xiaohong Qiu, Yulin Mo, Wuning |
author_sort | Yang, Zheng |
collection | PubMed |
description | This study aimed to identify potential essential genes and pathways in diabetes of the exocrine pancreas (DEP) and explore possible molecular mechanisms. The array dataset GSE76895 was downloaded from the Gene Expression Omnibus database. Pancreatic tissue samples from 20 Diabetes of the exocrine pancreas and 32 nondiabetic individuals were selected for analysis. GEO2R analyzed differentially expressed genes (DEGs) in the 2 groups. Gene ontology annotation, Kyoto Encyclopedia of Genes Genomes and Reactome pathway enrichment analyses and Gene Set Enrichment Analysis were performed in this study. Protein-protein interaction (PPI) networks were constructed using Cytoscape software, and core networks were identified using MCODE plugins. A total of 62 genes, including 59 up-regulated and 3 down-regulated genes, were differentially expressed in DEP samples compared with nondiabetic patients. PPI network with 53 nodes and 138 edges was established. HLA-DRA is identified as the central gene of the PPI network and maybe a marker gene for DEP. Furthermore, up-regulated DEGs are mainly enriched in pathways related to the immune system and infection. The results of this study suggest that HLA-DRA and immune system pathways may play essential roles in DEP. |
format | Online Article Text |
id | pubmed-9410602 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-94106022022-08-26 Identification of key genes and pathways associated with diabetes of the exocrine pancreas Yang, Zheng Li, Shengqi Liu, Huaying Su, Qisheng Li, Xiaohong Qiu, Yulin Mo, Wuning Medicine (Baltimore) Research Article This study aimed to identify potential essential genes and pathways in diabetes of the exocrine pancreas (DEP) and explore possible molecular mechanisms. The array dataset GSE76895 was downloaded from the Gene Expression Omnibus database. Pancreatic tissue samples from 20 Diabetes of the exocrine pancreas and 32 nondiabetic individuals were selected for analysis. GEO2R analyzed differentially expressed genes (DEGs) in the 2 groups. Gene ontology annotation, Kyoto Encyclopedia of Genes Genomes and Reactome pathway enrichment analyses and Gene Set Enrichment Analysis were performed in this study. Protein-protein interaction (PPI) networks were constructed using Cytoscape software, and core networks were identified using MCODE plugins. A total of 62 genes, including 59 up-regulated and 3 down-regulated genes, were differentially expressed in DEP samples compared with nondiabetic patients. PPI network with 53 nodes and 138 edges was established. HLA-DRA is identified as the central gene of the PPI network and maybe a marker gene for DEP. Furthermore, up-regulated DEGs are mainly enriched in pathways related to the immune system and infection. The results of this study suggest that HLA-DRA and immune system pathways may play essential roles in DEP. Lippincott Williams & Wilkins 2022-08-26 /pmc/articles/PMC9410602/ /pubmed/36042664 http://dx.doi.org/10.1097/MD.0000000000029781 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | Research Article Yang, Zheng Li, Shengqi Liu, Huaying Su, Qisheng Li, Xiaohong Qiu, Yulin Mo, Wuning Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title | Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title_full | Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title_fullStr | Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title_full_unstemmed | Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title_short | Identification of key genes and pathways associated with diabetes of the exocrine pancreas |
title_sort | identification of key genes and pathways associated with diabetes of the exocrine pancreas |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410602/ https://www.ncbi.nlm.nih.gov/pubmed/36042664 http://dx.doi.org/10.1097/MD.0000000000029781 |
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