Cargando…

Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli

Cold shock adaptability is a key survival skill of gut bacteria of warm-blooded animals. Escherichia coli cold shock responses are controlled by a complex multi-gene, timely-ordered transcriptional program. We investigated its underlying mechanisms. Having identified short-term, cold shock repressed...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dash, Suchintak, Palma, Cristina S D, Baptista, Ines S C, Almeida, Bilena L B, Bahrudeen, Mohamed N M, Chauhan, Vatsala, Jagadeesan, Rahul, Ribeiro, Andre S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Gene regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9410904/ https://www.ncbi.nlm.nih.gov/pubmed/35920318 http://dx.doi.org/10.1093/nar/gkac643

Ejemplares similares

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
por: L.B. Almeida, Bilena, et al.
Publicado: (2022)

Effects of supercoiling on enhancer–promoter contacts
por: Benedetti, Fabrizio, et al.
Publicado: (2014)

Autoregulation of topoisomerase I expression by supercoiling sensitive transcription
por: Ahmed, Wareed, et al.
Publicado: (2016)

Protein-mediated looping of DNA under tension requires supercoiling
por: Yan, Yan, et al.
Publicado: (2018)

Protein-mediated loops in supercoiled DNA create large topological domains
por: Yan, Yan, et al.
Publicado: (2018)

Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling
por: El Houdaigui, Bilal, et al.
Publicado: (2019)

Psoralen mapping reveals a bacterial genome supercoiling landscape dominated by transcription
por: Visser, Bryan J, et al.
Publicado: (2022)

The centromeric nucleosome-like CENP–T–W–S–X complex induces positive supercoils into DNA
por: Takeuchi, Kozo, et al.
Publicado: (2014)

Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties
por: Lim, Ci Ji, et al.
Publicado: (2014)

Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time
por: Yan, Yan, et al.
Publicado: (2021)

What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii
por: Pineau, Maïwenn, et al.
Publicado: (2022)

Enhanced binding of an HU homologue under increased DNA supercoiling preserves chromosome organisation and sustains Streptomyces hyphal growth
por: Strzałka, Agnieszka, et al.
Publicado: (2022)

Localized modulation of DNA supercoiling, triggered by the Shigella anti-silencer VirB, is sufficient to relieve H-NS-mediated silencing
por: Picker, Michael A, et al.
Publicado: (2023)

Analytical kinetic model of native tandem promoters in E. coli
por: Chauhan, Vatsala, et al.
Publicado: (2022)

Heat shock represses rRNA synthesis by inactivation of TIF-IA and lncRNA-dependent changes in nucleosome positioning
por: Zhao, Zhongliang, et al.
Publicado: (2016)

The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii
por: Ouafa, Zghidi-Abouzid, et al.
Publicado: (2012)

Modes of TAL effector-mediated repression
por: Werner, Jeannette, et al.
Publicado: (2014)

Tight cooperation between Mot1p and NC2β in regulating genome-wide transcription, repression of transcription following heat shock induction and genetic interaction with SAGA
por: Spedale, Gianpiero, et al.
Publicado: (2012)

Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins
por: Ren, Xiangle, et al.
Publicado: (2020)

Gene repression by minimal lac loops in vivo
por: Bond, Laura M., et al.
Publicado: (2010)

Mechanism of promoter repression by Lac repressor–DNA loops
por: Becker, Nicole A., et al.
Publicado: (2013)

TIP60 represses activation of endogenous retroviral elements
por: Rajagopalan, Deepa, et al.
Publicado: (2018)

The autoregulator Aca2 mediates anti-CRISPR repression
por: Birkholz, Nils, et al.
Publicado: (2019)

SAYP and Brahma are important for ‘repressive’ and ‘transient’ Pol II pausing
por: Vorobyeva, Nadezhda E., et al.
Publicado: (2012)

Estrogen represses gene expression through reconfiguring chromatin structures
por: Osmanbeyoglu, Hatice Ulku, et al.
Publicado: (2013)

Musashi mediates translational repression of the Drosophila hypoxia inducible factor
por: Bertolin, Agustina P., et al.
Publicado: (2016)

DNA residence time is a regulatory factor of transcription repression
por: Clauß, Karen, et al.
Publicado: (2017)

Nuclear pyruvate kinase M2 complex serves as a transcriptional coactivator of arylhydrocarbon receptor
por: Matsuda, Shun, et al.
Publicado: (2016)

DNA sequence encoded repression of rRNA gene transcription in chromatin
por: Felle, Max, et al.
Publicado: (2010)

Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins
por: Shehreen, Saadlee, et al.
Publicado: (2022)

MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3
por: Gooding, Clare, et al.
Publicado: (2013)

Bacterial promoter repression by DNA looping without protein–protein binding competition
por: Becker, Nicole A., et al.
Publicado: (2014)

MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma
por: Lodrini, Marco, et al.
Publicado: (2013)

Repression of class I transcription by cadmium is mediated by the protein phosphatase 2A
por: Zhou, Lei, et al.
Publicado: (2013)

Antisense transcriptional interference mediates condition-specific gene repression in budding yeast
por: Nevers, Alicia, et al.
Publicado: (2018)

Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters
por: Chen, Fuquan, et al.
Publicado: (2020)

A cascade of transcriptional repression determines sexual commitment and development in Plasmodium falciparum
por: Shang, Xiaomin, et al.
Publicado: (2021)

Antisense-mediated repression of SAGA-dependent genes involves the HIR histone chaperone
por: Soudet, Julien, et al.
Publicado: (2022)

Crol contributes to PRE-mediated repression and Polycomb group proteins recruitment in Drosophila
por: Erokhin, Maksim, et al.
Publicado: (2023)

DNA elements tether canonical Polycomb Repressive Complex 1 to human genes
por: Barrasa, Juan I, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_k2rc11inlfgrcouaj806uptrnp