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Cost function for low-dimensional manifold topology assessment
In reduced-order modeling, complex systems that exhibit high state-space dimensionality are described and evolved using a small number of parameters. These parameters can be obtained in a data-driven way, where a high-dimensional dataset is projected onto a lower-dimensional basis. A complex system...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411209/ https://www.ncbi.nlm.nih.gov/pubmed/36008473 http://dx.doi.org/10.1038/s41598-022-18655-1 |
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author | Zdybał, Kamila Armstrong, Elizabeth Sutherland, James C. Parente, Alessandro |
author_facet | Zdybał, Kamila Armstrong, Elizabeth Sutherland, James C. Parente, Alessandro |
author_sort | Zdybał, Kamila |
collection | PubMed |
description | In reduced-order modeling, complex systems that exhibit high state-space dimensionality are described and evolved using a small number of parameters. These parameters can be obtained in a data-driven way, where a high-dimensional dataset is projected onto a lower-dimensional basis. A complex system is then restricted to states on a low-dimensional manifold where it can be efficiently modeled. While this approach brings computational benefits, obtaining a good quality of the manifold topology becomes a crucial aspect when models, such as nonlinear regression, are built on top of the manifold. Here, we present a quantitative metric for characterizing manifold topologies. Our metric pays attention to non-uniqueness and spatial gradients in physical quantities of interest, and can be applied to manifolds of arbitrary dimensionality. Using the metric as a cost function in optimization algorithms, we show that optimized low-dimensional projections can be found. We delineate a few applications of the cost function to datasets representing argon plasma, reacting flows and atmospheric pollutant dispersion. We demonstrate how the cost function can assess various dimensionality reduction and manifold learning techniques as well as data preprocessing strategies in their capacity to yield quality low-dimensional projections. We show that improved manifold topologies can facilitate building nonlinear regression models. |
format | Online Article Text |
id | pubmed-9411209 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94112092022-08-27 Cost function for low-dimensional manifold topology assessment Zdybał, Kamila Armstrong, Elizabeth Sutherland, James C. Parente, Alessandro Sci Rep Article In reduced-order modeling, complex systems that exhibit high state-space dimensionality are described and evolved using a small number of parameters. These parameters can be obtained in a data-driven way, where a high-dimensional dataset is projected onto a lower-dimensional basis. A complex system is then restricted to states on a low-dimensional manifold where it can be efficiently modeled. While this approach brings computational benefits, obtaining a good quality of the manifold topology becomes a crucial aspect when models, such as nonlinear regression, are built on top of the manifold. Here, we present a quantitative metric for characterizing manifold topologies. Our metric pays attention to non-uniqueness and spatial gradients in physical quantities of interest, and can be applied to manifolds of arbitrary dimensionality. Using the metric as a cost function in optimization algorithms, we show that optimized low-dimensional projections can be found. We delineate a few applications of the cost function to datasets representing argon plasma, reacting flows and atmospheric pollutant dispersion. We demonstrate how the cost function can assess various dimensionality reduction and manifold learning techniques as well as data preprocessing strategies in their capacity to yield quality low-dimensional projections. We show that improved manifold topologies can facilitate building nonlinear regression models. Nature Publishing Group UK 2022-08-25 /pmc/articles/PMC9411209/ /pubmed/36008473 http://dx.doi.org/10.1038/s41598-022-18655-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Zdybał, Kamila Armstrong, Elizabeth Sutherland, James C. Parente, Alessandro Cost function for low-dimensional manifold topology assessment |
title | Cost function for low-dimensional manifold topology assessment |
title_full | Cost function for low-dimensional manifold topology assessment |
title_fullStr | Cost function for low-dimensional manifold topology assessment |
title_full_unstemmed | Cost function for low-dimensional manifold topology assessment |
title_short | Cost function for low-dimensional manifold topology assessment |
title_sort | cost function for low-dimensional manifold topology assessment |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411209/ https://www.ncbi.nlm.nih.gov/pubmed/36008473 http://dx.doi.org/10.1038/s41598-022-18655-1 |
work_keys_str_mv | AT zdybałkamila costfunctionforlowdimensionalmanifoldtopologyassessment AT armstrongelizabeth costfunctionforlowdimensionalmanifoldtopologyassessment AT sutherlandjamesc costfunctionforlowdimensionalmanifoldtopologyassessment AT parentealessandro costfunctionforlowdimensionalmanifoldtopologyassessment |