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An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests

The aim of this study was to derive a model to predict the risk of dogs developing chronic kidney disease (CKD) using data from electronic health records (EHR) collected during routine veterinary practice. Data from 57,402 dogs were included in the study. Two thirds of the EHRs were used to build th...

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Autores principales: Kokkinos, Yiannis, Morrison, JoAnn, Bradley, Richard, Panagiotakos, Theodoros, Ogeer, Jennifer, Chew, Dennis, O’Flynn, Ciaran, De Meyer, Geert, Watson, Phillip, Tagkopoulos, Ilias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411602/
https://www.ncbi.nlm.nih.gov/pubmed/36008537
http://dx.doi.org/10.1038/s41598-022-18793-6
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author Kokkinos, Yiannis
Morrison, JoAnn
Bradley, Richard
Panagiotakos, Theodoros
Ogeer, Jennifer
Chew, Dennis
O’Flynn, Ciaran
De Meyer, Geert
Watson, Phillip
Tagkopoulos, Ilias
author_facet Kokkinos, Yiannis
Morrison, JoAnn
Bradley, Richard
Panagiotakos, Theodoros
Ogeer, Jennifer
Chew, Dennis
O’Flynn, Ciaran
De Meyer, Geert
Watson, Phillip
Tagkopoulos, Ilias
author_sort Kokkinos, Yiannis
collection PubMed
description The aim of this study was to derive a model to predict the risk of dogs developing chronic kidney disease (CKD) using data from electronic health records (EHR) collected during routine veterinary practice. Data from 57,402 dogs were included in the study. Two thirds of the EHRs were used to build the model, which included feature selection and identification of the optimal neural network type and architecture. The remaining unseen EHRs were used to evaluate model performance. The final model was a recurrent neural network with 6 features (creatinine, blood urea nitrogen, urine specific gravity, urine protein, weight, age). Identifying CKD at the time of diagnosis, the model displayed a sensitivity of 91.4% and a specificity of 97.2%. When predicting future risk of CKD, model sensitivity was 68.8% at 1 year, and 44.8% 2 years before diagnosis. Positive predictive value (PPV) varied between 15 and 23% and was influenced by the age of the patient, while the negative predictive value remained above 99% under all tested conditions. While the modest PPV limits its use as a stand-alone diagnostic screening tool, high specificity and NPV make the model particularly effective at identifying patients that will not go on to develop CKD.
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spelling pubmed-94116022022-08-27 An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests Kokkinos, Yiannis Morrison, JoAnn Bradley, Richard Panagiotakos, Theodoros Ogeer, Jennifer Chew, Dennis O’Flynn, Ciaran De Meyer, Geert Watson, Phillip Tagkopoulos, Ilias Sci Rep Article The aim of this study was to derive a model to predict the risk of dogs developing chronic kidney disease (CKD) using data from electronic health records (EHR) collected during routine veterinary practice. Data from 57,402 dogs were included in the study. Two thirds of the EHRs were used to build the model, which included feature selection and identification of the optimal neural network type and architecture. The remaining unseen EHRs were used to evaluate model performance. The final model was a recurrent neural network with 6 features (creatinine, blood urea nitrogen, urine specific gravity, urine protein, weight, age). Identifying CKD at the time of diagnosis, the model displayed a sensitivity of 91.4% and a specificity of 97.2%. When predicting future risk of CKD, model sensitivity was 68.8% at 1 year, and 44.8% 2 years before diagnosis. Positive predictive value (PPV) varied between 15 and 23% and was influenced by the age of the patient, while the negative predictive value remained above 99% under all tested conditions. While the modest PPV limits its use as a stand-alone diagnostic screening tool, high specificity and NPV make the model particularly effective at identifying patients that will not go on to develop CKD. Nature Publishing Group UK 2022-08-25 /pmc/articles/PMC9411602/ /pubmed/36008537 http://dx.doi.org/10.1038/s41598-022-18793-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kokkinos, Yiannis
Morrison, JoAnn
Bradley, Richard
Panagiotakos, Theodoros
Ogeer, Jennifer
Chew, Dennis
O’Flynn, Ciaran
De Meyer, Geert
Watson, Phillip
Tagkopoulos, Ilias
An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title_full An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title_fullStr An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title_full_unstemmed An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title_short An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
title_sort early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411602/
https://www.ncbi.nlm.nih.gov/pubmed/36008537
http://dx.doi.org/10.1038/s41598-022-18793-6
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