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SRflow: Deep learning based super-resolution of 4D-flow MRI data

Exploiting 4D-flow magnetic resonance imaging (MRI) data to quantify hemodynamics requires an adequate spatio-temporal vector field resolution at a low noise level. To address this challenge, we provide a learned solution to super-resolve in vivo 4D-flow MRI data at a post-processing level. We propo...

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Autores principales: Shit, Suprosanna, Zimmermann, Judith, Ezhov, Ivan, Paetzold, Johannes C., Sanches, Augusto F., Pirkl, Carolin, Menze, Bjoern H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411720/
https://www.ncbi.nlm.nih.gov/pubmed/36034591
http://dx.doi.org/10.3389/frai.2022.928181
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author Shit, Suprosanna
Zimmermann, Judith
Ezhov, Ivan
Paetzold, Johannes C.
Sanches, Augusto F.
Pirkl, Carolin
Menze, Bjoern H.
author_facet Shit, Suprosanna
Zimmermann, Judith
Ezhov, Ivan
Paetzold, Johannes C.
Sanches, Augusto F.
Pirkl, Carolin
Menze, Bjoern H.
author_sort Shit, Suprosanna
collection PubMed
description Exploiting 4D-flow magnetic resonance imaging (MRI) data to quantify hemodynamics requires an adequate spatio-temporal vector field resolution at a low noise level. To address this challenge, we provide a learned solution to super-resolve in vivo 4D-flow MRI data at a post-processing level. We propose a deep convolutional neural network (CNN) that learns the inter-scale relationship of the velocity vector map and leverages an efficient residual learning scheme to make it computationally feasible. A novel, direction-sensitive, and robust loss function is crucial to learning vector-field data. We present a detailed comparative study between the proposed super-resolution and the conventional cubic B-spline based vector-field super-resolution. Our method improves the peak-velocity to noise ratio of the flow field by 10 and 30% for in vivo cardiovascular and cerebrovascular data, respectively, for 4 × super-resolution over the state-of-the-art cubic B-spline. Significantly, our method offers 10x faster inference over the cubic B-spline. The proposed approach for super-resolution of 4D-flow data would potentially improve the subsequent calculation of hemodynamic quantities.
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spelling pubmed-94117202022-08-27 SRflow: Deep learning based super-resolution of 4D-flow MRI data Shit, Suprosanna Zimmermann, Judith Ezhov, Ivan Paetzold, Johannes C. Sanches, Augusto F. Pirkl, Carolin Menze, Bjoern H. Front Artif Intell Artificial Intelligence Exploiting 4D-flow magnetic resonance imaging (MRI) data to quantify hemodynamics requires an adequate spatio-temporal vector field resolution at a low noise level. To address this challenge, we provide a learned solution to super-resolve in vivo 4D-flow MRI data at a post-processing level. We propose a deep convolutional neural network (CNN) that learns the inter-scale relationship of the velocity vector map and leverages an efficient residual learning scheme to make it computationally feasible. A novel, direction-sensitive, and robust loss function is crucial to learning vector-field data. We present a detailed comparative study between the proposed super-resolution and the conventional cubic B-spline based vector-field super-resolution. Our method improves the peak-velocity to noise ratio of the flow field by 10 and 30% for in vivo cardiovascular and cerebrovascular data, respectively, for 4 × super-resolution over the state-of-the-art cubic B-spline. Significantly, our method offers 10x faster inference over the cubic B-spline. The proposed approach for super-resolution of 4D-flow data would potentially improve the subsequent calculation of hemodynamic quantities. Frontiers Media S.A. 2022-08-12 /pmc/articles/PMC9411720/ /pubmed/36034591 http://dx.doi.org/10.3389/frai.2022.928181 Text en Copyright © 2022 Shit, Zimmermann, Ezhov, Paetzold, Sanches, Pirkl and Menze. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Artificial Intelligence
Shit, Suprosanna
Zimmermann, Judith
Ezhov, Ivan
Paetzold, Johannes C.
Sanches, Augusto F.
Pirkl, Carolin
Menze, Bjoern H.
SRflow: Deep learning based super-resolution of 4D-flow MRI data
title SRflow: Deep learning based super-resolution of 4D-flow MRI data
title_full SRflow: Deep learning based super-resolution of 4D-flow MRI data
title_fullStr SRflow: Deep learning based super-resolution of 4D-flow MRI data
title_full_unstemmed SRflow: Deep learning based super-resolution of 4D-flow MRI data
title_short SRflow: Deep learning based super-resolution of 4D-flow MRI data
title_sort srflow: deep learning based super-resolution of 4d-flow mri data
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9411720/
https://www.ncbi.nlm.nih.gov/pubmed/36034591
http://dx.doi.org/10.3389/frai.2022.928181
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