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Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases

[Image: see text] Enoyl-CoA carboxylases/reductases (ECRs) are some of the most efficient CO(2)-fixing enzymes described to date. However, the molecular mechanisms underlying the extraordinary catalytic activity of ECRs on the level of the protein assembly remain elusive. Here we used a combination...

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Autores principales: DeMirci, Hasan, Rao, Yashas, Stoffel, Gabriele M., Vögeli, Bastian, Schell, Kristina, Gomez, Aharon, Batyuk, Alexander, Gati, Cornelius, Sierra, Raymond G., Hunter, Mark S., Dao, E. Han, Ciftci, Halil I., Hayes, Brandon, Poitevin, Fredric, Li, Po-Nan, Kaur, Manat, Tono, Kensuke, Saez, David Adrian, Deutsch, Samuel, Yoshikuni, Yasuo, Grubmüller, Helmut, Erb, Tobias J., Vöhringer-Martinez, Esteban, Wakatsuki, Soichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413435/
https://www.ncbi.nlm.nih.gov/pubmed/36032767
http://dx.doi.org/10.1021/acscentsci.2c00057
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author DeMirci, Hasan
Rao, Yashas
Stoffel, Gabriele M.
Vögeli, Bastian
Schell, Kristina
Gomez, Aharon
Batyuk, Alexander
Gati, Cornelius
Sierra, Raymond G.
Hunter, Mark S.
Dao, E. Han
Ciftci, Halil I.
Hayes, Brandon
Poitevin, Fredric
Li, Po-Nan
Kaur, Manat
Tono, Kensuke
Saez, David Adrian
Deutsch, Samuel
Yoshikuni, Yasuo
Grubmüller, Helmut
Erb, Tobias J.
Vöhringer-Martinez, Esteban
Wakatsuki, Soichi
author_facet DeMirci, Hasan
Rao, Yashas
Stoffel, Gabriele M.
Vögeli, Bastian
Schell, Kristina
Gomez, Aharon
Batyuk, Alexander
Gati, Cornelius
Sierra, Raymond G.
Hunter, Mark S.
Dao, E. Han
Ciftci, Halil I.
Hayes, Brandon
Poitevin, Fredric
Li, Po-Nan
Kaur, Manat
Tono, Kensuke
Saez, David Adrian
Deutsch, Samuel
Yoshikuni, Yasuo
Grubmüller, Helmut
Erb, Tobias J.
Vöhringer-Martinez, Esteban
Wakatsuki, Soichi
author_sort DeMirci, Hasan
collection PubMed
description [Image: see text] Enoyl-CoA carboxylases/reductases (ECRs) are some of the most efficient CO(2)-fixing enzymes described to date. However, the molecular mechanisms underlying the extraordinary catalytic activity of ECRs on the level of the protein assembly remain elusive. Here we used a combination of ambient-temperature X-ray free electron laser (XFEL) and cryogenic synchrotron experiments to study the structural organization of the ECR from Kitasatospora setae. The K. setae ECR is a homotetramer that differentiates into a pair of dimers of open- and closed-form subunits in the catalytically active state. Using molecular dynamics simulations and structure-based mutagenesis, we show that catalysis is synchronized in the K. setae ECR across the pair of dimers. This conformational coupling of catalytic domains is conferred by individual amino acids to achieve high CO(2)-fixation rates. Our results provide unprecedented insights into the dynamic organization and synchronized inter- and intrasubunit communications of this remarkably efficient CO(2)-fixing enzyme during catalysis.
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spelling pubmed-94134352022-08-27 Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases DeMirci, Hasan Rao, Yashas Stoffel, Gabriele M. Vögeli, Bastian Schell, Kristina Gomez, Aharon Batyuk, Alexander Gati, Cornelius Sierra, Raymond G. Hunter, Mark S. Dao, E. Han Ciftci, Halil I. Hayes, Brandon Poitevin, Fredric Li, Po-Nan Kaur, Manat Tono, Kensuke Saez, David Adrian Deutsch, Samuel Yoshikuni, Yasuo Grubmüller, Helmut Erb, Tobias J. Vöhringer-Martinez, Esteban Wakatsuki, Soichi ACS Cent Sci [Image: see text] Enoyl-CoA carboxylases/reductases (ECRs) are some of the most efficient CO(2)-fixing enzymes described to date. However, the molecular mechanisms underlying the extraordinary catalytic activity of ECRs on the level of the protein assembly remain elusive. Here we used a combination of ambient-temperature X-ray free electron laser (XFEL) and cryogenic synchrotron experiments to study the structural organization of the ECR from Kitasatospora setae. The K. setae ECR is a homotetramer that differentiates into a pair of dimers of open- and closed-form subunits in the catalytically active state. Using molecular dynamics simulations and structure-based mutagenesis, we show that catalysis is synchronized in the K. setae ECR across the pair of dimers. This conformational coupling of catalytic domains is conferred by individual amino acids to achieve high CO(2)-fixation rates. Our results provide unprecedented insights into the dynamic organization and synchronized inter- and intrasubunit communications of this remarkably efficient CO(2)-fixing enzyme during catalysis. American Chemical Society 2022-04-25 2022-08-24 /pmc/articles/PMC9413435/ /pubmed/36032767 http://dx.doi.org/10.1021/acscentsci.2c00057 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle DeMirci, Hasan
Rao, Yashas
Stoffel, Gabriele M.
Vögeli, Bastian
Schell, Kristina
Gomez, Aharon
Batyuk, Alexander
Gati, Cornelius
Sierra, Raymond G.
Hunter, Mark S.
Dao, E. Han
Ciftci, Halil I.
Hayes, Brandon
Poitevin, Fredric
Li, Po-Nan
Kaur, Manat
Tono, Kensuke
Saez, David Adrian
Deutsch, Samuel
Yoshikuni, Yasuo
Grubmüller, Helmut
Erb, Tobias J.
Vöhringer-Martinez, Esteban
Wakatsuki, Soichi
Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title_full Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title_fullStr Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title_full_unstemmed Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title_short Intersubunit Coupling Enables Fast CO(2)-Fixation by Reductive Carboxylases
title_sort intersubunit coupling enables fast co(2)-fixation by reductive carboxylases
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413435/
https://www.ncbi.nlm.nih.gov/pubmed/36032767
http://dx.doi.org/10.1021/acscentsci.2c00057
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