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Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica

Lagerstroemia indica is a widely used ornamental plant in summer gardens because of its desirable plant shape. The weeping traits of plants are related to secondary cell wall thickness and hormone signaling. NAC (NAM-ATAF1/2-CUC2), as one of the plant-specific transcription factors, is a switch for...

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Autores principales: Gu, Cuihua, Shang, Linxue, Zhang, Guozhe, Wang, Qun, Ma, Qingqing, Hong, Sidan, Zhao, Yu, Yang, Liyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413744/
https://www.ncbi.nlm.nih.gov/pubmed/36015471
http://dx.doi.org/10.3390/plants11162168
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author Gu, Cuihua
Shang, Linxue
Zhang, Guozhe
Wang, Qun
Ma, Qingqing
Hong, Sidan
Zhao, Yu
Yang, Liyuan
author_facet Gu, Cuihua
Shang, Linxue
Zhang, Guozhe
Wang, Qun
Ma, Qingqing
Hong, Sidan
Zhao, Yu
Yang, Liyuan
author_sort Gu, Cuihua
collection PubMed
description Lagerstroemia indica is a widely used ornamental plant in summer gardens because of its desirable plant shape. The weeping traits of plants are related to secondary cell wall thickness and hormone signaling. NAC (NAM-ATAF1/2-CUC2), as one of the plant-specific transcription factors, is a switch for the secondary cell wall and also involved in leaf senescence, phytohormone signaling, and other growth processes. We identified a total of 21 LiNAC genes from the transcriptome data, which we divided into 14 subgroups and 2 groups. The physicochemical characteristics of amino acids, subcellular localization, transmembrane structure, GO and KEGG enrichment, and expression patterns were also examined. The qRT-PCR analysis showed that the expressions of LiNAC8 and LiNAC13 in upright L. indica ‘Shaoguifei’ and weeping L. indica ‘Xiariwuniang’ were significantly higher from the beginning to the end of growth stage (S1–S3), and the expressions of ‘Shaoguifei’ were always higher than those of ‘Xiariwuniang’. However, LiNAC2 showed a downward trend in S1–S3 and the relative expression level of ‘Shaoguifei’ was lower than that of ‘Xiariwuniang’. It is hypothesized that these LiNAC genes may be involved in the regulation of weeping traits in L. indica. The results of this study provide a basis for analyzing the functions of LiNAC genes and help to explore the molecular regulatory mechanisms related to the weeping traits in L. indica.
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spelling pubmed-94137442022-08-27 Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica Gu, Cuihua Shang, Linxue Zhang, Guozhe Wang, Qun Ma, Qingqing Hong, Sidan Zhao, Yu Yang, Liyuan Plants (Basel) Article Lagerstroemia indica is a widely used ornamental plant in summer gardens because of its desirable plant shape. The weeping traits of plants are related to secondary cell wall thickness and hormone signaling. NAC (NAM-ATAF1/2-CUC2), as one of the plant-specific transcription factors, is a switch for the secondary cell wall and also involved in leaf senescence, phytohormone signaling, and other growth processes. We identified a total of 21 LiNAC genes from the transcriptome data, which we divided into 14 subgroups and 2 groups. The physicochemical characteristics of amino acids, subcellular localization, transmembrane structure, GO and KEGG enrichment, and expression patterns were also examined. The qRT-PCR analysis showed that the expressions of LiNAC8 and LiNAC13 in upright L. indica ‘Shaoguifei’ and weeping L. indica ‘Xiariwuniang’ were significantly higher from the beginning to the end of growth stage (S1–S3), and the expressions of ‘Shaoguifei’ were always higher than those of ‘Xiariwuniang’. However, LiNAC2 showed a downward trend in S1–S3 and the relative expression level of ‘Shaoguifei’ was lower than that of ‘Xiariwuniang’. It is hypothesized that these LiNAC genes may be involved in the regulation of weeping traits in L. indica. The results of this study provide a basis for analyzing the functions of LiNAC genes and help to explore the molecular regulatory mechanisms related to the weeping traits in L. indica. MDPI 2022-08-21 /pmc/articles/PMC9413744/ /pubmed/36015471 http://dx.doi.org/10.3390/plants11162168 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gu, Cuihua
Shang, Linxue
Zhang, Guozhe
Wang, Qun
Ma, Qingqing
Hong, Sidan
Zhao, Yu
Yang, Liyuan
Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title_full Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title_fullStr Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title_full_unstemmed Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title_short Identification and Expression Analysis of NAC Gene Family in Weeping Trait of Lagerstroemia indica
title_sort identification and expression analysis of nac gene family in weeping trait of lagerstroemia indica
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413744/
https://www.ncbi.nlm.nih.gov/pubmed/36015471
http://dx.doi.org/10.3390/plants11162168
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