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Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment

Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers....

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Autores principales: Schultz, Júnia, Parise, Mariana Teixeira Dornelles, Parise, Doglas, Medeiros, Laenne G., Sousa, Thiago J., Kato, Rodrigo B., Uetanabaro, Ana Paula Trovatti, Araújo, Fabrício, Ramos, Rommel Thiago Jucá, de Castro Soares, Siomar, Brenig, Bertram, de Carvalho Azevedo, Vasco Ariston, Góes-Neto, Aristóteles, Rosado, Alexandre S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413872/
https://www.ncbi.nlm.nih.gov/pubmed/36014090
http://dx.doi.org/10.3390/microorganisms10081673
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author Schultz, Júnia
Parise, Mariana Teixeira Dornelles
Parise, Doglas
Medeiros, Laenne G.
Sousa, Thiago J.
Kato, Rodrigo B.
Uetanabaro, Ana Paula Trovatti
Araújo, Fabrício
Ramos, Rommel Thiago Jucá
de Castro Soares, Siomar
Brenig, Bertram
de Carvalho Azevedo, Vasco Ariston
Góes-Neto, Aristóteles
Rosado, Alexandre S.
author_facet Schultz, Júnia
Parise, Mariana Teixeira Dornelles
Parise, Doglas
Medeiros, Laenne G.
Sousa, Thiago J.
Kato, Rodrigo B.
Uetanabaro, Ana Paula Trovatti
Araújo, Fabrício
Ramos, Rommel Thiago Jucá
de Castro Soares, Siomar
Brenig, Bertram
de Carvalho Azevedo, Vasco Ariston
Góes-Neto, Aristóteles
Rosado, Alexandre S.
author_sort Schultz, Júnia
collection PubMed
description Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers. From the sediments of Deception Island, we isolated representatives of the genus Anoxybacillus, a widely spread genus that is mainly encountered in thermophilic environments. However, the phylogeny of this genus and its adaptive mechanisms in the geothermal sites of cold environments remain unknown. To the best of our knowledge, this is the first study to unravel the genomic features and provide insights into the phylogenomics and metabolic potential of members of the genus Anoxybacillus inhabiting the Antarctic thermophilic ecosystem. Here, we report the genome sequencing data of seven A. flavithermus strains isolated from two geothermal sites on Deception Island, Antarctic Peninsula. Their genomes were approximately 3.0 Mb in size, had a G + C ratio of 42%, and were predicted to encode 3500 proteins on average. We observed that the strains were phylogenomically closest to each other (Average Nucleotide Identity (ANI) > 98%) and to A. flavithermus (ANI 95%). In silico genomic analysis revealed 15 resistance and metabolic islands, as well as genes related to genome stabilization, DNA repair systems against UV radiation threats, temperature adaptation, heat- and cold-shock proteins (Csps), and resistance to alkaline conditions. Remarkably, glycosyl hydrolase enzyme-encoding genes, secondary metabolites, and prophage sequences were predicted, revealing metabolic and cellular capabilities for potential biotechnological applications.
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spelling pubmed-94138722022-08-27 Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment Schultz, Júnia Parise, Mariana Teixeira Dornelles Parise, Doglas Medeiros, Laenne G. Sousa, Thiago J. Kato, Rodrigo B. Uetanabaro, Ana Paula Trovatti Araújo, Fabrício Ramos, Rommel Thiago Jucá de Castro Soares, Siomar Brenig, Bertram de Carvalho Azevedo, Vasco Ariston Góes-Neto, Aristóteles Rosado, Alexandre S. Microorganisms Article Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers. From the sediments of Deception Island, we isolated representatives of the genus Anoxybacillus, a widely spread genus that is mainly encountered in thermophilic environments. However, the phylogeny of this genus and its adaptive mechanisms in the geothermal sites of cold environments remain unknown. To the best of our knowledge, this is the first study to unravel the genomic features and provide insights into the phylogenomics and metabolic potential of members of the genus Anoxybacillus inhabiting the Antarctic thermophilic ecosystem. Here, we report the genome sequencing data of seven A. flavithermus strains isolated from two geothermal sites on Deception Island, Antarctic Peninsula. Their genomes were approximately 3.0 Mb in size, had a G + C ratio of 42%, and were predicted to encode 3500 proteins on average. We observed that the strains were phylogenomically closest to each other (Average Nucleotide Identity (ANI) > 98%) and to A. flavithermus (ANI 95%). In silico genomic analysis revealed 15 resistance and metabolic islands, as well as genes related to genome stabilization, DNA repair systems against UV radiation threats, temperature adaptation, heat- and cold-shock proteins (Csps), and resistance to alkaline conditions. Remarkably, glycosyl hydrolase enzyme-encoding genes, secondary metabolites, and prophage sequences were predicted, revealing metabolic and cellular capabilities for potential biotechnological applications. MDPI 2022-08-19 /pmc/articles/PMC9413872/ /pubmed/36014090 http://dx.doi.org/10.3390/microorganisms10081673 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Schultz, Júnia
Parise, Mariana Teixeira Dornelles
Parise, Doglas
Medeiros, Laenne G.
Sousa, Thiago J.
Kato, Rodrigo B.
Uetanabaro, Ana Paula Trovatti
Araújo, Fabrício
Ramos, Rommel Thiago Jucá
de Castro Soares, Siomar
Brenig, Bertram
de Carvalho Azevedo, Vasco Ariston
Góes-Neto, Aristóteles
Rosado, Alexandre S.
Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title_full Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title_fullStr Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title_full_unstemmed Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title_short Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
title_sort unraveling the genomic potential of the thermophilic bacterium anoxybacillus flavithermus from an antarctic geothermal environment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9413872/
https://www.ncbi.nlm.nih.gov/pubmed/36014090
http://dx.doi.org/10.3390/microorganisms10081673
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