Cargando…

A Case Study for the Recovery of Authentic Microbial Ancient DNA from Soil Samples

High Throughput DNA Sequencing (HTS) revolutionized the field of paleomicrobiology, leading to an explosive growth of microbial ancient DNA (aDNA) studies, especially from environmental samples. However, aDNA studies that examine environmental microbes routinely fail to authenticate aDNA, examine la...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pérez, Vilma, Liu, Yichen, Hengst, Martha B., Weyrich, Laura S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9414430/ https://www.ncbi.nlm.nih.gov/pubmed/36014039 http://dx.doi.org/10.3390/microorganisms10081623

Ejemplares similares

Proper Authentication of Ancient DNA Is Still Essential
por: Eisenhofer, Raphael, et al.
Publicado: (2018)

Assessing alignment-based taxonomic classification of ancient microbial DNA
por: Eisenhofer, Raphael, et al.
Publicado: (2019)

The Neandertal genome and ancient DNA authenticity
por: Green, Richard E, et al.
Publicado: (2009)

On Controls in Ancient Microbiome Studies, and Microbial Resilience in Ancient Samples
por: Santiago-Rodriguez, Tasha M., et al.
Publicado: (2018)

The sources and authenticity of the history of the ancient mexicans /
por: Radin, Paul, 1883-1959
Publicado: (1920)

Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array
por: Devault, Alison M., et al.
Publicado: (2014)

Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
por: Farrer, Andrew G., et al.
Publicado: (2021)

Microbiome applications for pathology: challenges of low microbial biomass samples during diagnostic testing
por: Selway, Caitlin A, et al.
Publicado: (2020)

Aquatic Thermal Reservoirs of Microbial Life in a Remote and Extreme High Andean Hydrothermal System
por: Pérez, Vilma, et al.
Publicado: (2020)

An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole‐genome sequencing data
por: Xu, Wenhao, et al.
Publicado: (2020)

Studying ancient human oral microbiomes could yield insights into the evolutionary history of noncommunicable diseases
por: Gancz, Abigail S, et al.
Publicado: (2023)

Non-Destructive Sampling of Ancient Insect DNA
por: Thomsen, Philip Francis, et al.
Publicado: (2009)

Preamplification Procedure for the Analysis of Ancient DNA Samples
por: Del Gaudio, Stefania, et al.
Publicado: (2013)

Isolating Viable Ancient Bacteria: What You Put In Is What You Get Out
por: Eisenhofer, Raphael, et al.
Publicado: (2016)

Investigating the demographic history of Japan using ancient oral microbiota
por: Eisenhofer, Raphael, et al.
Publicado: (2020)

The effect of soil sample size, for practical DNA extraction, on soil microbial diversity in different taxonomic ranks
por: Morita, Hiroki, et al.
Publicado: (2021)

Ancient DNA studies: new perspectives on old samples
por: Rizzi, Ermanno, et al.
Publicado: (2012)

Correction: Ancient DNA studies: new perspectives on old samples
por: Rizzi, Ermanno, et al.
Publicado: (2013)

Mitochondrial Haplogroup Classification of Ancient DNA Samples Using Haplotracker
por: Kim, Kijeong, et al.
Publicado: (2022)

Bacterial Active Community Cycling in Response to Solar Radiation and Their Influence on Nutrient Changes in a High-Altitude Wetland
por: Molina, Verónica, et al.
Publicado: (2016)

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data
por: Weiß, Clemens L, et al.
Publicado: (2015)

Epigenetics of Ancient DNA
por: Zhenilo, S. V., et al.
Publicado: (2016)

New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples
por: Diroma, Maria Angela, et al.
Publicado: (2021)

Detection Trend of Helminth Eggs in the Strata Soil Samples from Ancient Historic Places of Korea
por: Seo, Min, et al.
Publicado: (2016)

Ancient landscapes and the relationship with microbial nitrification
por: Jenkins, Sasha N., et al.
Publicado: (2016)

Comparative analysis of DNA extraction protocols for ancient soft tissue museum samples
por: Zhang, Ming, et al.
Publicado: (2021)

Authentication of medicinal plants by DNA markers
por: Ganie, Showkat Hussain, et al.
Publicado: (2015)

Soil Sample Preservation Strategy Affects the Microbial Community Structure
por: Pavlovska, Mariia, et al.
Publicado: (2021)

To Clone or Not To Clone: Method Analysis for Retrieving Consensus Sequences In Ancient DNA Samples
por: Winters, Misa, et al.
Publicado: (2011)

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects
por: Yoshida, Kentaro, et al.
Publicado: (2015)

Predicting sample success for large‐scale ancient DNA studies on marine mammals
por: Keighley, Xénia, et al.
Publicado: (2021)

Using HPLC with In-Column Derivatization to Authenticate Coffee Samples
por: Manwaring, Corey W., et al.
Publicado: (2023)

Evidence for signatures of ancient microbial life in paleosols
por: Frindte, Katharina, et al.
Publicado: (2020)

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid
por: Saladié, Montserrat, et al.
Publicado: (2020)

The Recovery, Interpretation and Use of Ancient Pathogen Genomes
por: Duchêne, Sebastián, et al.
Publicado: (2020)

No Tangible Effects of Field-Grown Cisgenic Potatoes on Soil Microbial Communities
por: Krause, Sascha M. B., et al.
Publicado: (2020)

DNA barcoding of authentic and substitute samples of herb of the family Asparagaceae and Asclepiadaceae based on the ITS2 region
por: Rai, Padmalatha S, et al.
Publicado: (2012)

Using Ancient Samples in Projection Analysis
por: Yang, Melinda A., et al.
Publicado: (2015)

Bacterial Survival under Extreme UV Radiation: A Comparative Proteomics Study of Rhodobacter sp., Isolated from High Altitude Wetlands in Chile
por: Pérez, Vilma, et al.
Publicado: (2017)

Testing of Alignment Parameters for Ancient Samples: Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool
por: Taron, Ulrike H., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_l9a0ua0lv74vr2idd9c62v8mnj