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Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota
The Moroccan coast is characterized by a diversity of climate, reflecting a great richness and diversity of fauna and flora. By this, marine microbiota plays a fundamental role in many biogeochemical processes, environmental modifications, and responses to temperature changes. To date, no exploratio...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9414901/ https://www.ncbi.nlm.nih.gov/pubmed/36014042 http://dx.doi.org/10.3390/microorganisms10081622 |
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author | Sbaoui, Yousra Ezaouine, Abdelkarim Toumi, Marwene Farkas, Rózsa Kbaich, Mouad Ait Habbane, Mouna El Mouttaqui, Sara Kadiri, Fatem Zahra El Messal, Mariame Tóth, Erika Bennis, Faiza Chegdani, Fatima |
author_facet | Sbaoui, Yousra Ezaouine, Abdelkarim Toumi, Marwene Farkas, Rózsa Kbaich, Mouad Ait Habbane, Mouna El Mouttaqui, Sara Kadiri, Fatem Zahra El Messal, Mariame Tóth, Erika Bennis, Faiza Chegdani, Fatima |
author_sort | Sbaoui, Yousra |
collection | PubMed |
description | The Moroccan coast is characterized by a diversity of climate, reflecting a great richness and diversity of fauna and flora. By this, marine microbiota plays a fundamental role in many biogeochemical processes, environmental modifications, and responses to temperature changes. To date, no exploration by high-throughput techniques has been carried out on the characterization of the Moroccan marine microbiota. The objective of this work is to study the diversity and metabolic functions of MMM from the Moroccan coast (Atlantic and Mediterranean) according to the water source (WS) and the type of climate (CT) using the approach high-throughput sequencing of the 16SrRNA gene. Four water samples of twelve sampling sites from the four major climates along the Moroccan coastline were collected, and prokaryotic DNA was extracted. V4 region of 16S rRNA gene was amplified, and the product PCR was sequenced by Illumina Miseq. The β-diversity and α-diversity indices were determined to assess the species richness and evenness. The obtained results were analyzed by Mothur and R software. A total of twenty-eight Bacterial phyla and twelve Archaea were identified from the samples. Proteobacteria, Bacteroidetes, and Cyanobacteria are the three key bacterial phyla, and the Archaeal phyla identified are: Euryarchaeota, Nanoarchaeaeota, Crenarchaeota, Hydrothermarchaeota, Asgardaeota, Diapherotrites, and Thaumarchaeota in the Moroccan coastline and the four climates studied. The whole phylum are involved in marine biogeochemical cycles, and through their functions they participate in the homeostasis of the ocean in the presence of pollutants or stressful biotic and abiotic factors. In conclusion, the obtained results reported sufficient deepness of sequencing to cover the majority of Archaeal and Bacterial genera in each site. We noticed a strong difference in microbiota diversity, abundance, and taxonomy inter- and intra-climates and water source without significant differences in function. To better explore this diversity, other omic approaches can be applied such as the metagenomic shotgun, and transcriptomic approaches allowing a better characterization of the Moroccan marine microbiota and to understand the mechanisms of its adaptation and its impacts in/on the ecosystem. |
format | Online Article Text |
id | pubmed-9414901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-94149012022-08-27 Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota Sbaoui, Yousra Ezaouine, Abdelkarim Toumi, Marwene Farkas, Rózsa Kbaich, Mouad Ait Habbane, Mouna El Mouttaqui, Sara Kadiri, Fatem Zahra El Messal, Mariame Tóth, Erika Bennis, Faiza Chegdani, Fatima Microorganisms Article The Moroccan coast is characterized by a diversity of climate, reflecting a great richness and diversity of fauna and flora. By this, marine microbiota plays a fundamental role in many biogeochemical processes, environmental modifications, and responses to temperature changes. To date, no exploration by high-throughput techniques has been carried out on the characterization of the Moroccan marine microbiota. The objective of this work is to study the diversity and metabolic functions of MMM from the Moroccan coast (Atlantic and Mediterranean) according to the water source (WS) and the type of climate (CT) using the approach high-throughput sequencing of the 16SrRNA gene. Four water samples of twelve sampling sites from the four major climates along the Moroccan coastline were collected, and prokaryotic DNA was extracted. V4 region of 16S rRNA gene was amplified, and the product PCR was sequenced by Illumina Miseq. The β-diversity and α-diversity indices were determined to assess the species richness and evenness. The obtained results were analyzed by Mothur and R software. A total of twenty-eight Bacterial phyla and twelve Archaea were identified from the samples. Proteobacteria, Bacteroidetes, and Cyanobacteria are the three key bacterial phyla, and the Archaeal phyla identified are: Euryarchaeota, Nanoarchaeaeota, Crenarchaeota, Hydrothermarchaeota, Asgardaeota, Diapherotrites, and Thaumarchaeota in the Moroccan coastline and the four climates studied. The whole phylum are involved in marine biogeochemical cycles, and through their functions they participate in the homeostasis of the ocean in the presence of pollutants or stressful biotic and abiotic factors. In conclusion, the obtained results reported sufficient deepness of sequencing to cover the majority of Archaeal and Bacterial genera in each site. We noticed a strong difference in microbiota diversity, abundance, and taxonomy inter- and intra-climates and water source without significant differences in function. To better explore this diversity, other omic approaches can be applied such as the metagenomic shotgun, and transcriptomic approaches allowing a better characterization of the Moroccan marine microbiota and to understand the mechanisms of its adaptation and its impacts in/on the ecosystem. MDPI 2022-08-10 /pmc/articles/PMC9414901/ /pubmed/36014042 http://dx.doi.org/10.3390/microorganisms10081622 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sbaoui, Yousra Ezaouine, Abdelkarim Toumi, Marwene Farkas, Rózsa Kbaich, Mouad Ait Habbane, Mouna El Mouttaqui, Sara Kadiri, Fatem Zahra El Messal, Mariame Tóth, Erika Bennis, Faiza Chegdani, Fatima Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title | Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title_full | Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title_fullStr | Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title_full_unstemmed | Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title_short | Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota |
title_sort | effect of climate on bacterial and archaeal diversity of moroccan marine microbiota |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9414901/ https://www.ncbi.nlm.nih.gov/pubmed/36014042 http://dx.doi.org/10.3390/microorganisms10081622 |
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