Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan

Bupleurum kaoi Liu, Chao, and Chuang is an endemic and endangered herb in Taiwan. In this study, the complete circular chloroplast genome of B. kaoi was reconstructed and annotated using Illumina sequencing. The genome size of B. kaoi is 155,938 bp, including a pair of inverted repeat regions (IRs:...

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Autores principales: Huang, Chi-Chun, Huang, Chao-Li, Hsu, Tsai-Wen, Chang, Li-Hui, Hung, Kuo-Hsiang, Wang, Wei-Kuang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9415577/
https://www.ncbi.nlm.nih.gov/pubmed/36034531
http://dx.doi.org/10.1080/23802359.2022.2082892
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author Huang, Chi-Chun
Huang, Chao-Li
Hsu, Tsai-Wen
Chang, Li-Hui
Hung, Kuo-Hsiang
Wang, Wei-Kuang
author_facet Huang, Chi-Chun
Huang, Chao-Li
Hsu, Tsai-Wen
Chang, Li-Hui
Hung, Kuo-Hsiang
Wang, Wei-Kuang
author_sort Huang, Chi-Chun
collection PubMed
description Bupleurum kaoi Liu, Chao, and Chuang is an endemic and endangered herb in Taiwan. In this study, the complete circular chloroplast genome of B. kaoi was reconstructed and annotated using Illumina sequencing. The genome size of B. kaoi is 155,938 bp, including a pair of inverted repeat regions (IRs: 26308 bp), separated by a large single-copy (LSC) region of 85,784 bp and a small single-copy (SSC) region of 17,538 bp. The GC content of the chloroplast genome is 37.6%. There are 113 different genes in the chloroplast genome of B. kaoi, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. A maximum-likelihood phylogenetic analysis showed that Bupleurum species is the monophyletic group, and B. kaoi belongs to subgenus Bupleurum and is closely related to B. scorzonerifolium.
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spelling pubmed-94155772022-08-27 Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan Huang, Chi-Chun Huang, Chao-Li Hsu, Tsai-Wen Chang, Li-Hui Hung, Kuo-Hsiang Wang, Wei-Kuang Mitochondrial DNA B Resour Plastome Announcement Bupleurum kaoi Liu, Chao, and Chuang is an endemic and endangered herb in Taiwan. In this study, the complete circular chloroplast genome of B. kaoi was reconstructed and annotated using Illumina sequencing. The genome size of B. kaoi is 155,938 bp, including a pair of inverted repeat regions (IRs: 26308 bp), separated by a large single-copy (LSC) region of 85,784 bp and a small single-copy (SSC) region of 17,538 bp. The GC content of the chloroplast genome is 37.6%. There are 113 different genes in the chloroplast genome of B. kaoi, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. A maximum-likelihood phylogenetic analysis showed that Bupleurum species is the monophyletic group, and B. kaoi belongs to subgenus Bupleurum and is closely related to B. scorzonerifolium. Taylor & Francis 2022-08-22 /pmc/articles/PMC9415577/ /pubmed/36034531 http://dx.doi.org/10.1080/23802359.2022.2082892 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Huang, Chi-Chun
Huang, Chao-Li
Hsu, Tsai-Wen
Chang, Li-Hui
Hung, Kuo-Hsiang
Wang, Wei-Kuang
Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title_full Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title_fullStr Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title_full_unstemmed Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title_short Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan
title_sort complete chloroplast genome and phylogenetic analysis of bupleurum kaoi liu, chao, and chuang, 1977: an endemic species in taiwan
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9415577/
https://www.ncbi.nlm.nih.gov/pubmed/36034531
http://dx.doi.org/10.1080/23802359.2022.2082892
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