Cargando…

Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase

The widespread use of plastics has led to their increasing presence in the environment and subsequent pollution. Some microorganisms degrade plastics in natural ecosystems and the associated metabolic pathways can be studied to understand the degradation mechanisms. Polystyrene (PS) is one of the mo...

Descripción completa

Detalles Bibliográficos
Autores principales: Parthasarathy, Anutthaman, Miranda, Renata Rezende, Eddingsaas, Nathan C., Chu, Jonathan, Freezman, Ian M., Tyler, Anna C., Hudson, André O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9416434/
https://www.ncbi.nlm.nih.gov/pubmed/36014041
http://dx.doi.org/10.3390/microorganisms10081619
_version_ 1784776479295406080
author Parthasarathy, Anutthaman
Miranda, Renata Rezende
Eddingsaas, Nathan C.
Chu, Jonathan
Freezman, Ian M.
Tyler, Anna C.
Hudson, André O.
author_facet Parthasarathy, Anutthaman
Miranda, Renata Rezende
Eddingsaas, Nathan C.
Chu, Jonathan
Freezman, Ian M.
Tyler, Anna C.
Hudson, André O.
author_sort Parthasarathy, Anutthaman
collection PubMed
description The widespread use of plastics has led to their increasing presence in the environment and subsequent pollution. Some microorganisms degrade plastics in natural ecosystems and the associated metabolic pathways can be studied to understand the degradation mechanisms. Polystyrene (PS) is one of the more recalcitrant plastic polymers that is degraded by only a few bacteria. Exiguobacterium is a genus of Gram-positive poly-extremophilic bacteria known to degrade PS, thus being of biotechnological interest, but its biochemical mechanisms of degradation have not yet been elucidated. Based solely on genome annotation, we initially proposed PS degradation by Exiguobacterium sp. RIT 594 via depolymerization and epoxidation catalyzed by a ring epoxidase. However, Fourier transform infrared (FTIR) spectroscopy analysis revealed an increase of carboxyl and hydroxyl groups with biodegradation, as well as of unconjugated C-C double bonds, both consistent with dearomatization of the styrene ring. This excludes any aerobic pathways involving side chain epoxidation and/or hydroxylation. Subsequent experiments confirmed that molecular oxygen is critical to PS degradation by RIT 594 because degradation ceased under oxygen-deprived conditions. Our studies suggest that styrene breakdown by this bacterium occurs via the sequential action of two enzymes encoded in the genome: an orphan aromatic ring-cleaving dioxygenase and a hydrolase.
format Online
Article
Text
id pubmed-9416434
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-94164342022-08-27 Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase Parthasarathy, Anutthaman Miranda, Renata Rezende Eddingsaas, Nathan C. Chu, Jonathan Freezman, Ian M. Tyler, Anna C. Hudson, André O. Microorganisms Article The widespread use of plastics has led to their increasing presence in the environment and subsequent pollution. Some microorganisms degrade plastics in natural ecosystems and the associated metabolic pathways can be studied to understand the degradation mechanisms. Polystyrene (PS) is one of the more recalcitrant plastic polymers that is degraded by only a few bacteria. Exiguobacterium is a genus of Gram-positive poly-extremophilic bacteria known to degrade PS, thus being of biotechnological interest, but its biochemical mechanisms of degradation have not yet been elucidated. Based solely on genome annotation, we initially proposed PS degradation by Exiguobacterium sp. RIT 594 via depolymerization and epoxidation catalyzed by a ring epoxidase. However, Fourier transform infrared (FTIR) spectroscopy analysis revealed an increase of carboxyl and hydroxyl groups with biodegradation, as well as of unconjugated C-C double bonds, both consistent with dearomatization of the styrene ring. This excludes any aerobic pathways involving side chain epoxidation and/or hydroxylation. Subsequent experiments confirmed that molecular oxygen is critical to PS degradation by RIT 594 because degradation ceased under oxygen-deprived conditions. Our studies suggest that styrene breakdown by this bacterium occurs via the sequential action of two enzymes encoded in the genome: an orphan aromatic ring-cleaving dioxygenase and a hydrolase. MDPI 2022-08-10 /pmc/articles/PMC9416434/ /pubmed/36014041 http://dx.doi.org/10.3390/microorganisms10081619 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Parthasarathy, Anutthaman
Miranda, Renata Rezende
Eddingsaas, Nathan C.
Chu, Jonathan
Freezman, Ian M.
Tyler, Anna C.
Hudson, André O.
Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title_full Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title_fullStr Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title_full_unstemmed Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title_short Polystyrene Degradation by Exiguobacterium sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase
title_sort polystyrene degradation by exiguobacterium sp. rit 594: preliminary evidence for a pathway containing an atypical oxygenase
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9416434/
https://www.ncbi.nlm.nih.gov/pubmed/36014041
http://dx.doi.org/10.3390/microorganisms10081619
work_keys_str_mv AT parthasarathyanutthaman polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT mirandarenatarezende polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT eddingsaasnathanc polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT chujonathan polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT freezmanianm polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT tylerannac polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase
AT hudsonandreo polystyrenedegradationbyexiguobacteriumsprit594preliminaryevidenceforapathwaycontaininganatypicaloxygenase