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Encoding edge type information in graphlets
Graph embedding approaches have been attracting increasing attention in recent years mainly due to their universal applicability. They convert network data into a vector space in which the graph structural information and properties are maximumly preserved. Most existing approaches, however, ignore...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9416998/ https://www.ncbi.nlm.nih.gov/pubmed/36026434 http://dx.doi.org/10.1371/journal.pone.0273609 |
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author | Jia, Mingshan Van Alboom, Maité Goubert, Liesbet Bracke, Piet Gabrys, Bogdan Musial, Katarzyna |
author_facet | Jia, Mingshan Van Alboom, Maité Goubert, Liesbet Bracke, Piet Gabrys, Bogdan Musial, Katarzyna |
author_sort | Jia, Mingshan |
collection | PubMed |
description | Graph embedding approaches have been attracting increasing attention in recent years mainly due to their universal applicability. They convert network data into a vector space in which the graph structural information and properties are maximumly preserved. Most existing approaches, however, ignore the rich information about interactions between nodes, i.e., edge attribute or edge type. Moreover, the learned embeddings suffer from a lack of explainability, and cannot be used to study the effects of typed structures in edge-attributed networks. In this paper, we introduce a framework to embed edge type information in graphlets and generate a Typed-Edge Graphlets Degree Vector (TyE-GDV). Additionally, we extend two combinatorial approaches, i.e., the colored graphlets and heterogeneous graphlets approaches to edge-attributed networks. Through applying the proposed method to a case study of chronic pain patients, we find that not only the network structure of a patient could indicate his/her perceived pain grade, but also certain social ties, such as those with friends, colleagues, and healthcare professionals, are more crucial in understanding the impact of chronic pain. Further, we demonstrate that in a node classification task, the edge-type encoded graphlets approaches outperform the traditional graphlet degree vector approach by a significant margin, and that TyE-GDV could achieve a competitive performance of the combinatorial approaches while being far more efficient in space requirements. |
format | Online Article Text |
id | pubmed-9416998 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-94169982022-08-27 Encoding edge type information in graphlets Jia, Mingshan Van Alboom, Maité Goubert, Liesbet Bracke, Piet Gabrys, Bogdan Musial, Katarzyna PLoS One Research Article Graph embedding approaches have been attracting increasing attention in recent years mainly due to their universal applicability. They convert network data into a vector space in which the graph structural information and properties are maximumly preserved. Most existing approaches, however, ignore the rich information about interactions between nodes, i.e., edge attribute or edge type. Moreover, the learned embeddings suffer from a lack of explainability, and cannot be used to study the effects of typed structures in edge-attributed networks. In this paper, we introduce a framework to embed edge type information in graphlets and generate a Typed-Edge Graphlets Degree Vector (TyE-GDV). Additionally, we extend two combinatorial approaches, i.e., the colored graphlets and heterogeneous graphlets approaches to edge-attributed networks. Through applying the proposed method to a case study of chronic pain patients, we find that not only the network structure of a patient could indicate his/her perceived pain grade, but also certain social ties, such as those with friends, colleagues, and healthcare professionals, are more crucial in understanding the impact of chronic pain. Further, we demonstrate that in a node classification task, the edge-type encoded graphlets approaches outperform the traditional graphlet degree vector approach by a significant margin, and that TyE-GDV could achieve a competitive performance of the combinatorial approaches while being far more efficient in space requirements. Public Library of Science 2022-08-26 /pmc/articles/PMC9416998/ /pubmed/36026434 http://dx.doi.org/10.1371/journal.pone.0273609 Text en © 2022 Jia et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Jia, Mingshan Van Alboom, Maité Goubert, Liesbet Bracke, Piet Gabrys, Bogdan Musial, Katarzyna Encoding edge type information in graphlets |
title | Encoding edge type information in graphlets |
title_full | Encoding edge type information in graphlets |
title_fullStr | Encoding edge type information in graphlets |
title_full_unstemmed | Encoding edge type information in graphlets |
title_short | Encoding edge type information in graphlets |
title_sort | encoding edge type information in graphlets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9416998/ https://www.ncbi.nlm.nih.gov/pubmed/36026434 http://dx.doi.org/10.1371/journal.pone.0273609 |
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