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Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study
Acute respiratory distress syndrome is a heterogeneous pathophysiological process responsible for significant morbidity and mortality in pediatric intensive care patients. Diagnosis is defined by clinical characteristics that identify the syndrome after development. Subphenotyping patients at risk o...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9418138/ https://www.ncbi.nlm.nih.gov/pubmed/36028738 http://dx.doi.org/10.1038/s41598-022-15476-0 |
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author | Ohlstrom, Denis J. Sul, Christina Vohwinkel, Christine U. Hernandez-Lagunas, Laura Karimpour-Fard, Anis Mourani, Peter M. Carpenter, Todd C. Nozik, Eva S. Sucharov, Carmen C. |
author_facet | Ohlstrom, Denis J. Sul, Christina Vohwinkel, Christine U. Hernandez-Lagunas, Laura Karimpour-Fard, Anis Mourani, Peter M. Carpenter, Todd C. Nozik, Eva S. Sucharov, Carmen C. |
author_sort | Ohlstrom, Denis J. |
collection | PubMed |
description | Acute respiratory distress syndrome is a heterogeneous pathophysiological process responsible for significant morbidity and mortality in pediatric intensive care patients. Diagnosis is defined by clinical characteristics that identify the syndrome after development. Subphenotyping patients at risk of progression to ARDS could provide the opportunity for therapeutic intervention. microRNAs, non-coding RNAs stable in circulation, are a promising biomarker candidate. We conducted a single-center prospective cohort study to evaluate random forest classification of microarray-quantified circulating microRNAs in critically ill pediatric patients. We additionally selected a sub-cohort for parallel metabolomics profiling as a pilot study for concurrent use of miRNAs and metabolites as circulating biomarkers. In 35 patients (n = 21 acute respiratory distress, n = 14 control) 15 microRNAs were differentially expressed. Unsupervised random forest classification accurately grouped ARDS and control patients with an area under the curve of 0.762, which was improved to 0.839 when subset to only patients with bacterial infection. Nine metabolites were differentially abundant between acute respiratory distress and control patients (n = 4, both groups) and abundance was highly correlated with miRNA expression. Random forest classification of microRNAs differentiated critically ill pediatric patients who developed acute respiratory distress relative to those who do not. The differential expression of microRNAs and metabolites provides a strong foundation for further work to validate their use as a prognostic biomarker. |
format | Online Article Text |
id | pubmed-9418138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94181382022-08-28 Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study Ohlstrom, Denis J. Sul, Christina Vohwinkel, Christine U. Hernandez-Lagunas, Laura Karimpour-Fard, Anis Mourani, Peter M. Carpenter, Todd C. Nozik, Eva S. Sucharov, Carmen C. Sci Rep Article Acute respiratory distress syndrome is a heterogeneous pathophysiological process responsible for significant morbidity and mortality in pediatric intensive care patients. Diagnosis is defined by clinical characteristics that identify the syndrome after development. Subphenotyping patients at risk of progression to ARDS could provide the opportunity for therapeutic intervention. microRNAs, non-coding RNAs stable in circulation, are a promising biomarker candidate. We conducted a single-center prospective cohort study to evaluate random forest classification of microarray-quantified circulating microRNAs in critically ill pediatric patients. We additionally selected a sub-cohort for parallel metabolomics profiling as a pilot study for concurrent use of miRNAs and metabolites as circulating biomarkers. In 35 patients (n = 21 acute respiratory distress, n = 14 control) 15 microRNAs were differentially expressed. Unsupervised random forest classification accurately grouped ARDS and control patients with an area under the curve of 0.762, which was improved to 0.839 when subset to only patients with bacterial infection. Nine metabolites were differentially abundant between acute respiratory distress and control patients (n = 4, both groups) and abundance was highly correlated with miRNA expression. Random forest classification of microRNAs differentiated critically ill pediatric patients who developed acute respiratory distress relative to those who do not. The differential expression of microRNAs and metabolites provides a strong foundation for further work to validate their use as a prognostic biomarker. Nature Publishing Group UK 2022-08-26 /pmc/articles/PMC9418138/ /pubmed/36028738 http://dx.doi.org/10.1038/s41598-022-15476-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ohlstrom, Denis J. Sul, Christina Vohwinkel, Christine U. Hernandez-Lagunas, Laura Karimpour-Fard, Anis Mourani, Peter M. Carpenter, Todd C. Nozik, Eva S. Sucharov, Carmen C. Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title | Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title_full | Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title_fullStr | Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title_full_unstemmed | Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title_short | Plasma microRNA and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
title_sort | plasma microrna and metabolic changes associated with pediatric acute respiratory distress syndrome: a prospective cohort study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9418138/ https://www.ncbi.nlm.nih.gov/pubmed/36028738 http://dx.doi.org/10.1038/s41598-022-15476-0 |
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