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Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology

AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform inv...

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Autores principales: Cevik, Lokman, Landrove, Marilyn Vazquez, Aslan, Mehmet Tahir, Khammad, Vasilii, Garagorry Guerra, Francisco Jose, Cabello‐Izquierdo, Yolanda, Wang, Wesley, Zhao, Jing, Becker, Aline Paixao, Czeisler, Catherine, Rendeiro, Anne Costa, Véras, Lucas Luis Sousa, Zanon, Maicon Fernando, Reis, Rui Manuel, Matsushita, Marcus de Medeiros, Ozduman, Koray, Pamir, M. Necmettin, Ersen Danyeli, Ayca, Pearce, Thomas, Felicella, Michelle, Eschbacher, Jennifer, Arakaki, Naomi, Martinetto, Horacio, Parwani, Anil, Thomas, Diana L., Otero, José Javier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425010/
https://www.ncbi.nlm.nih.gov/pubmed/35014126
http://dx.doi.org/10.1111/bpa.13050
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author Cevik, Lokman
Landrove, Marilyn Vazquez
Aslan, Mehmet Tahir
Khammad, Vasilii
Garagorry Guerra, Francisco Jose
Cabello‐Izquierdo, Yolanda
Wang, Wesley
Zhao, Jing
Becker, Aline Paixao
Czeisler, Catherine
Rendeiro, Anne Costa
Véras, Lucas Luis Sousa
Zanon, Maicon Fernando
Reis, Rui Manuel
Matsushita, Marcus de Medeiros
Ozduman, Koray
Pamir, M. Necmettin
Ersen Danyeli, Ayca
Pearce, Thomas
Felicella, Michelle
Eschbacher, Jennifer
Arakaki, Naomi
Martinetto, Horacio
Parwani, Anil
Thomas, Diana L.
Otero, José Javier
author_facet Cevik, Lokman
Landrove, Marilyn Vazquez
Aslan, Mehmet Tahir
Khammad, Vasilii
Garagorry Guerra, Francisco Jose
Cabello‐Izquierdo, Yolanda
Wang, Wesley
Zhao, Jing
Becker, Aline Paixao
Czeisler, Catherine
Rendeiro, Anne Costa
Véras, Lucas Luis Sousa
Zanon, Maicon Fernando
Reis, Rui Manuel
Matsushita, Marcus de Medeiros
Ozduman, Koray
Pamir, M. Necmettin
Ersen Danyeli, Ayca
Pearce, Thomas
Felicella, Michelle
Eschbacher, Jennifer
Arakaki, Naomi
Martinetto, Horacio
Parwani, Anil
Thomas, Diana L.
Otero, José Javier
author_sort Cevik, Lokman
collection PubMed
description AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform investment strategies in surgical neuropathology would improve patient care in these settings. METHODS: We used simple information theory calculations on a brain cancer simulation model and real‐world data sets to compare contributions of clinical, histologic, immunohistochemical, and molecular information. An image noise assay was generated to compare the efficiencies of different image segmentation methods in H&E and Olig2 stained images obtained from digital slides. An auto‐adjustable image analysis workflow was generated and compared with neuropathologists for p53 positivity quantification. Finally, the density of extracted features of the nuclei, p53 positivity quantification, and combined ATRX/age feature was used to generate a predictive model for 1p/19q codeletion in IDH‐mutant tumors. RESULTS: Information theory calculations can be performed on open access platforms and provide significant insight into linear and nonlinear associations between diagnostic biomarkers. Age, p53, and ATRX status have significant information for the diagnosis of IDH‐mutant tumors. The predictive models may facilitate the reduction of false‐positive 1p/19q codeletion by fluorescence in situ hybridization (FISH) testing. CONCLUSIONS: We posit that this approach provides an improvement on the cIMPACT‐NOW workflow recommendations for IDH‐mutant tumors and a framework for future resource and testing allocation.
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spelling pubmed-94250102022-08-31 Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology Cevik, Lokman Landrove, Marilyn Vazquez Aslan, Mehmet Tahir Khammad, Vasilii Garagorry Guerra, Francisco Jose Cabello‐Izquierdo, Yolanda Wang, Wesley Zhao, Jing Becker, Aline Paixao Czeisler, Catherine Rendeiro, Anne Costa Véras, Lucas Luis Sousa Zanon, Maicon Fernando Reis, Rui Manuel Matsushita, Marcus de Medeiros Ozduman, Koray Pamir, M. Necmettin Ersen Danyeli, Ayca Pearce, Thomas Felicella, Michelle Eschbacher, Jennifer Arakaki, Naomi Martinetto, Horacio Parwani, Anil Thomas, Diana L. Otero, José Javier Brain Pathol Research Articles AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform investment strategies in surgical neuropathology would improve patient care in these settings. METHODS: We used simple information theory calculations on a brain cancer simulation model and real‐world data sets to compare contributions of clinical, histologic, immunohistochemical, and molecular information. An image noise assay was generated to compare the efficiencies of different image segmentation methods in H&E and Olig2 stained images obtained from digital slides. An auto‐adjustable image analysis workflow was generated and compared with neuropathologists for p53 positivity quantification. Finally, the density of extracted features of the nuclei, p53 positivity quantification, and combined ATRX/age feature was used to generate a predictive model for 1p/19q codeletion in IDH‐mutant tumors. RESULTS: Information theory calculations can be performed on open access platforms and provide significant insight into linear and nonlinear associations between diagnostic biomarkers. Age, p53, and ATRX status have significant information for the diagnosis of IDH‐mutant tumors. The predictive models may facilitate the reduction of false‐positive 1p/19q codeletion by fluorescence in situ hybridization (FISH) testing. CONCLUSIONS: We posit that this approach provides an improvement on the cIMPACT‐NOW workflow recommendations for IDH‐mutant tumors and a framework for future resource and testing allocation. John Wiley and Sons Inc. 2022-01-10 /pmc/articles/PMC9425010/ /pubmed/35014126 http://dx.doi.org/10.1111/bpa.13050 Text en © 2022 The Authors. Brain Pathology published by John Wiley & Sons Ltd on behalf of International Society of Neuropathology. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Cevik, Lokman
Landrove, Marilyn Vazquez
Aslan, Mehmet Tahir
Khammad, Vasilii
Garagorry Guerra, Francisco Jose
Cabello‐Izquierdo, Yolanda
Wang, Wesley
Zhao, Jing
Becker, Aline Paixao
Czeisler, Catherine
Rendeiro, Anne Costa
Véras, Lucas Luis Sousa
Zanon, Maicon Fernando
Reis, Rui Manuel
Matsushita, Marcus de Medeiros
Ozduman, Koray
Pamir, M. Necmettin
Ersen Danyeli, Ayca
Pearce, Thomas
Felicella, Michelle
Eschbacher, Jennifer
Arakaki, Naomi
Martinetto, Horacio
Parwani, Anil
Thomas, Diana L.
Otero, José Javier
Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title_full Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title_fullStr Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title_full_unstemmed Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title_short Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
title_sort information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425010/
https://www.ncbi.nlm.nih.gov/pubmed/35014126
http://dx.doi.org/10.1111/bpa.13050
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