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Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology
AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform inv...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425010/ https://www.ncbi.nlm.nih.gov/pubmed/35014126 http://dx.doi.org/10.1111/bpa.13050 |
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author | Cevik, Lokman Landrove, Marilyn Vazquez Aslan, Mehmet Tahir Khammad, Vasilii Garagorry Guerra, Francisco Jose Cabello‐Izquierdo, Yolanda Wang, Wesley Zhao, Jing Becker, Aline Paixao Czeisler, Catherine Rendeiro, Anne Costa Véras, Lucas Luis Sousa Zanon, Maicon Fernando Reis, Rui Manuel Matsushita, Marcus de Medeiros Ozduman, Koray Pamir, M. Necmettin Ersen Danyeli, Ayca Pearce, Thomas Felicella, Michelle Eschbacher, Jennifer Arakaki, Naomi Martinetto, Horacio Parwani, Anil Thomas, Diana L. Otero, José Javier |
author_facet | Cevik, Lokman Landrove, Marilyn Vazquez Aslan, Mehmet Tahir Khammad, Vasilii Garagorry Guerra, Francisco Jose Cabello‐Izquierdo, Yolanda Wang, Wesley Zhao, Jing Becker, Aline Paixao Czeisler, Catherine Rendeiro, Anne Costa Véras, Lucas Luis Sousa Zanon, Maicon Fernando Reis, Rui Manuel Matsushita, Marcus de Medeiros Ozduman, Koray Pamir, M. Necmettin Ersen Danyeli, Ayca Pearce, Thomas Felicella, Michelle Eschbacher, Jennifer Arakaki, Naomi Martinetto, Horacio Parwani, Anil Thomas, Diana L. Otero, José Javier |
author_sort | Cevik, Lokman |
collection | PubMed |
description | AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform investment strategies in surgical neuropathology would improve patient care in these settings. METHODS: We used simple information theory calculations on a brain cancer simulation model and real‐world data sets to compare contributions of clinical, histologic, immunohistochemical, and molecular information. An image noise assay was generated to compare the efficiencies of different image segmentation methods in H&E and Olig2 stained images obtained from digital slides. An auto‐adjustable image analysis workflow was generated and compared with neuropathologists for p53 positivity quantification. Finally, the density of extracted features of the nuclei, p53 positivity quantification, and combined ATRX/age feature was used to generate a predictive model for 1p/19q codeletion in IDH‐mutant tumors. RESULTS: Information theory calculations can be performed on open access platforms and provide significant insight into linear and nonlinear associations between diagnostic biomarkers. Age, p53, and ATRX status have significant information for the diagnosis of IDH‐mutant tumors. The predictive models may facilitate the reduction of false‐positive 1p/19q codeletion by fluorescence in situ hybridization (FISH) testing. CONCLUSIONS: We posit that this approach provides an improvement on the cIMPACT‐NOW workflow recommendations for IDH‐mutant tumors and a framework for future resource and testing allocation. |
format | Online Article Text |
id | pubmed-9425010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-94250102022-08-31 Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology Cevik, Lokman Landrove, Marilyn Vazquez Aslan, Mehmet Tahir Khammad, Vasilii Garagorry Guerra, Francisco Jose Cabello‐Izquierdo, Yolanda Wang, Wesley Zhao, Jing Becker, Aline Paixao Czeisler, Catherine Rendeiro, Anne Costa Véras, Lucas Luis Sousa Zanon, Maicon Fernando Reis, Rui Manuel Matsushita, Marcus de Medeiros Ozduman, Koray Pamir, M. Necmettin Ersen Danyeli, Ayca Pearce, Thomas Felicella, Michelle Eschbacher, Jennifer Arakaki, Naomi Martinetto, Horacio Parwani, Anil Thomas, Diana L. Otero, José Javier Brain Pathol Research Articles AIMS: Resource‐strained healthcare ecosystems often struggle with the adoption of the World Health Organization (WHO) recommendations for the classification of central nervous system (CNS) tumors. The generation of robust clinical diagnostic aids and the advancement of simple solutions to inform investment strategies in surgical neuropathology would improve patient care in these settings. METHODS: We used simple information theory calculations on a brain cancer simulation model and real‐world data sets to compare contributions of clinical, histologic, immunohistochemical, and molecular information. An image noise assay was generated to compare the efficiencies of different image segmentation methods in H&E and Olig2 stained images obtained from digital slides. An auto‐adjustable image analysis workflow was generated and compared with neuropathologists for p53 positivity quantification. Finally, the density of extracted features of the nuclei, p53 positivity quantification, and combined ATRX/age feature was used to generate a predictive model for 1p/19q codeletion in IDH‐mutant tumors. RESULTS: Information theory calculations can be performed on open access platforms and provide significant insight into linear and nonlinear associations between diagnostic biomarkers. Age, p53, and ATRX status have significant information for the diagnosis of IDH‐mutant tumors. The predictive models may facilitate the reduction of false‐positive 1p/19q codeletion by fluorescence in situ hybridization (FISH) testing. CONCLUSIONS: We posit that this approach provides an improvement on the cIMPACT‐NOW workflow recommendations for IDH‐mutant tumors and a framework for future resource and testing allocation. John Wiley and Sons Inc. 2022-01-10 /pmc/articles/PMC9425010/ /pubmed/35014126 http://dx.doi.org/10.1111/bpa.13050 Text en © 2022 The Authors. Brain Pathology published by John Wiley & Sons Ltd on behalf of International Society of Neuropathology. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Cevik, Lokman Landrove, Marilyn Vazquez Aslan, Mehmet Tahir Khammad, Vasilii Garagorry Guerra, Francisco Jose Cabello‐Izquierdo, Yolanda Wang, Wesley Zhao, Jing Becker, Aline Paixao Czeisler, Catherine Rendeiro, Anne Costa Véras, Lucas Luis Sousa Zanon, Maicon Fernando Reis, Rui Manuel Matsushita, Marcus de Medeiros Ozduman, Koray Pamir, M. Necmettin Ersen Danyeli, Ayca Pearce, Thomas Felicella, Michelle Eschbacher, Jennifer Arakaki, Naomi Martinetto, Horacio Parwani, Anil Thomas, Diana L. Otero, José Javier Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title | Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title_full | Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title_fullStr | Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title_full_unstemmed | Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title_short | Information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
title_sort | information theory approaches to improve glioma diagnostic workflows in surgical neuropathology |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425010/ https://www.ncbi.nlm.nih.gov/pubmed/35014126 http://dx.doi.org/10.1111/bpa.13050 |
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