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The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma

OBJECTIVE: Uveal melanoma (UM) is an aggressive malignancy with a poor prognosis and no available effective treatment. Therefore, exploring a potential prognostic marker for UM could provide new possibilities for early detection, recurrence, and treatment. METHODS: In this study, we used “ConsensusC...

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Autores principales: Wang, Wanpeng, Wang, Sha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425775/
https://www.ncbi.nlm.nih.gov/pubmed/36052234
http://dx.doi.org/10.3389/fonc.2022.918230
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author Wang, Wanpeng
Wang, Sha
author_facet Wang, Wanpeng
Wang, Sha
author_sort Wang, Wanpeng
collection PubMed
description OBJECTIVE: Uveal melanoma (UM) is an aggressive malignancy with a poor prognosis and no available effective treatment. Therefore, exploring a potential prognostic marker for UM could provide new possibilities for early detection, recurrence, and treatment. METHODS: In this study, we used “ConsensusClusterPlus” to classify patients with UM into subgroups, screened for significant differences in immune prognostic factors between subgroups, selected three genes using LASSO (Least absolute shrinkage and selection operator) regression to construct a risk model, and performed tumor immune cell infiltration analysis on the risk model. infiltration analysis, and then verified the heterogeneous role of the 3 core genes in other cancers by pan-cancer analysis and validate its expression by RT-qPCR in normal and tumor cells. RESULTS: We consistently categorized 80 UM patients into two subgroups after the immunogenetic set, where the UM1 subgroup had a better prognosis than the UM2 subgroup, and used 3 immune-related genes AZGP1, SLCO5A1, and CTF1 to derive risk scores as independent prognostic markers and predictors of UM clinicopathological features. We found significant differences in overall survival (OS) between low- and high-risk groups, and prognostic models were negatively correlated with B cell and myeloid dendritic cell and positively correlated with CD8+ T cell AZGP1 and CTF1 were significantly upregulated in UM cells compared with normal UM cells. CONCLUSION: Immunogens are significantly associated with the prognosis of UM, and further classification based on genetic characteristics may help to develop immunotherapeutic strategies and provide new approaches to develop customized treatment strategies for patients.
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spelling pubmed-94257752022-08-31 The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma Wang, Wanpeng Wang, Sha Front Oncol Oncology OBJECTIVE: Uveal melanoma (UM) is an aggressive malignancy with a poor prognosis and no available effective treatment. Therefore, exploring a potential prognostic marker for UM could provide new possibilities for early detection, recurrence, and treatment. METHODS: In this study, we used “ConsensusClusterPlus” to classify patients with UM into subgroups, screened for significant differences in immune prognostic factors between subgroups, selected three genes using LASSO (Least absolute shrinkage and selection operator) regression to construct a risk model, and performed tumor immune cell infiltration analysis on the risk model. infiltration analysis, and then verified the heterogeneous role of the 3 core genes in other cancers by pan-cancer analysis and validate its expression by RT-qPCR in normal and tumor cells. RESULTS: We consistently categorized 80 UM patients into two subgroups after the immunogenetic set, where the UM1 subgroup had a better prognosis than the UM2 subgroup, and used 3 immune-related genes AZGP1, SLCO5A1, and CTF1 to derive risk scores as independent prognostic markers and predictors of UM clinicopathological features. We found significant differences in overall survival (OS) between low- and high-risk groups, and prognostic models were negatively correlated with B cell and myeloid dendritic cell and positively correlated with CD8+ T cell AZGP1 and CTF1 were significantly upregulated in UM cells compared with normal UM cells. CONCLUSION: Immunogens are significantly associated with the prognosis of UM, and further classification based on genetic characteristics may help to develop immunotherapeutic strategies and provide new approaches to develop customized treatment strategies for patients. Frontiers Media S.A. 2022-08-16 /pmc/articles/PMC9425775/ /pubmed/36052234 http://dx.doi.org/10.3389/fonc.2022.918230 Text en Copyright © 2022 Wang and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wang, Wanpeng
Wang, Sha
The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title_full The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title_fullStr The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title_full_unstemmed The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title_short The prognostic value of immune-related genes AZGP1, SLCO5A1, and CTF1 in Uveal melanoma
title_sort prognostic value of immune-related genes azgp1, slco5a1, and ctf1 in uveal melanoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9425775/
https://www.ncbi.nlm.nih.gov/pubmed/36052234
http://dx.doi.org/10.3389/fonc.2022.918230
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