Cargando…

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

Metaproteomics is used to explore the functional dynamics of microbial communities. However, acquiring metaproteomic data by tandem mass spectrometry (MS/MS) is time-consuming and resource-intensive, and there is a demand for computational methods that can be used to reduce these resource requiremen...

Descripción completa

Detalles Bibliográficos
Autores principales:	Simopoulos, Caitlin M. A., Ning, Zhibin, Li, Leyuan, Khamis, Mona M., Zhang, Xu, Lavallée-Adam, Mathieu, Figeys, Daniel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2022
Materias:	Methods and Protocols
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9426440/ https://www.ncbi.nlm.nih.gov/pubmed/35950762 http://dx.doi.org/10.1128/msystems.00381-22

Ejemplares similares

PhamClust: a phage genome clustering tool using proteomic equivalence
por: Gauthier, Christian H., et al.
Publicado: (2023)

A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches
por: Li, Leyuan, et al.
Publicado: (2020)

OrthoClust: an orthology-based network framework for clustering data across multiple species
por: Yan, Koon-Kiu, et al.
Publicado: (2014)

MeShClust: an intelligent tool for clustering DNA sequences
por: James, Benjamin T, et al.
Publicado: (2018)

Application of MALDI-TOF MS for enumerating bacterial constituents of defined consortia
por: Coryell, Michael P., et al.
Publicado: (2023)

GiniClust2: a cluster-aware, weighted ensemble clustering method for cell-type detection
por: Tsoucas, Daphne, et al.
Publicado: (2018)

2-fluoro-1-methylpyridinium p-toluene sulfonate: a new LC-MS/MS derivatization reagent for vitamin D metabolites
por: Alexandridou, Anastasia, et al.
Publicado: (2023)

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics
por: Li, Leyuan, et al.
Publicado: (2023)

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index
por: Jiang, Lan, et al.
Publicado: (2016)

dropClust: efficient clustering of ultra-large scRNA-seq data
por: Sinha, Debajyoti, et al.
Publicado: (2018)

SynerClust: a highly scalable, synteny-aware orthologue clustering tool
por: Georgescu, Christophe H., et al.
Publicado: (2018)

A validated LC-MS/MS assay for quantification of 24(S)-hydroxycholesterol in plasma and cerebrospinal fluid
por: Sidhu, Rohini, et al.
Publicado: (2015)

An LC/MS/MS method for analyzing the steroid metabolome with high accuracy and from small serum samples
Publicado: (2020)

A high-throughput platform for the rapid screening of vitamin D status by direct infusion-MS/MS
por: Helmeczi, Erick, et al.
Publicado: (2022)

High Sensitivity and Wide Linearity LC-MS/MS Method for Oxylipin Quantification in Multiple Biological Samples
por: Fu, Xian, et al.
Publicado: (2022)

A MALDI-TOF MS database for fast identification of Vibrio spp. potentially pathogenic to marine mollusks
por: Moussa, M., et al.
Publicado: (2021)

Determination of Paraquat in Arabidopsis Tissues and Protoplasts by UHPLC-MS/MS
por: Zhao, Mingming, et al.
Publicado: (2023)

Cold-induced phase separation for the simple and reliable extraction of sex hormones for subsequent LC-MS/MS analysis
por: Peng, Rui, et al.
Publicado: (2021)

Characteristic fragmentation of polyunsaturated fatty acids with allylic vicinal diols in positive-ion LC/ESI-MS/MS
por: Zhu, Huibin, et al.
Publicado: (2023)

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics
por: Zhang, Xu, et al.
Publicado: (2022)

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
por: Li, Leyuan, et al.
Publicado: (2020)

Direct quantification of lipopeptide biosurfactants in biological samples via HPLC and UPLC-MS requires sample modification with an organic solvent
por: Biniarz, Piotr, et al.
Publicado: (2017)

Short Incubation of Positive Blood Cultures on Solid Media for Species Identification by MALDI-TOF MS: Which Agar Is the Fastest?
por: Froböse, Neele J., et al.
Publicado: (2021)

High-throughput analysis of anthocyanins in horticultural crops using probe electrospray ionization tandem mass spectrometry (PESI/MS/MS)
por: Ishibashi, Misaki, et al.
Publicado: (2023)

The LC-QTOF-MS/MS analysis of acid degradation products of Rifaximin, an antibiotic
por: Yaseen, Saima Baig, et al.
Publicado: (2022)

Sensitive UHPLC-MS/MS quantification method for 4β- and 4α-hydroxycholesterol in plasma for accurate CYP3A phenotyping
por: Suzuki, Yosuke, et al.
Publicado: (2022)

Ultrahigh resolution MS(1)/MS(2)-based reconstruction of metabolic networks in mammalian cells reveals changes for selenite and arsenite action
por: Fan, Teresa W.-M., et al.
Publicado: (2022)

A semi-virtual two dimensional gel electrophoresis: IF–ESI LC-MS/MS
por: Naryzhny, Stanislav, et al.
Publicado: (2017)

A quantitative LC-MS/MS method for analysis of mitochondrial -specific oxysterol metabolism
por: Borah, Khushboo, et al.
Publicado: (2020)

Human RNase 4 improves mRNA sequence characterization by LC–MS/MS
por: Wolf, Eric J, et al.
Publicado: (2022)

Pigments’ analysis of Citrus juicing making by‐products by LC‐MS/MS and LC‐DAD
por: Myrtsi, Eleni D., et al.
Publicado: (2022)

Quantifying phosphorylation dynamics in primary neuronal cultures using LC-MS/MS
por: Desch, Kristina, et al.
Publicado: (2021)

Development and validation of an APCI-MS/GC–MS approach for the classification and prediction of Cheddar cheese maturity
por: Gan, Heng Hui, et al.
Publicado: (2016)

A versatile LC-MS/MS approach for comprehensive, quantitative analysis of central metabolic pathways
por: Walvekar, Adhish, et al.
Publicado: (2018)

Validation of an LC-MS/MS method for the quantitation of phytosterols derived from Aloe vera gel
por: Nabeshima, Kazumi, et al.
Publicado: (2022)

Development of UPLC-MS/MS method and its pharmacokinetic application for estimation of sertraline in rat plasma
por: Rahman, Mohammad Akhlaquer
Publicado: (2022)

MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database
por: Cheng, Kai, et al.
Publicado: (2022)

An advanced method for propargylcholine phospholipid detection by direct-infusion MS
por: Yaghmour, Mohamed H., et al.
Publicado: (2021)

Analysis by LC-MS/MS of polar pesticides in fruits and vegetables using new hybrid stationary phase
por: Cutillas, Víctor, et al.
Publicado: (2021)

Sample preparation for proteomic analysis using a GeLC-MS/MS strategy
por: Paulo, Joao A.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_44tk2g8lcjqdso6ikdkvejgmc9