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The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb
Patrinia monandra C. B. Clarke is traditionally used for the treatment of inflammation, typhoid fever, injuries due to falls, abdominal pain, malaria, and acute appendicitis ulcers in China and Korea. In this study, the complete chloroplast genome of P. monandra was sequenced using the Illumina HiSe...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9427040/ https://www.ncbi.nlm.nih.gov/pubmed/36051369 http://dx.doi.org/10.1080/23802359.2022.2098855 |
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author | Wang, Xinhong Li, Lulu Ma, Xiaojun Su, He Shu, Jing |
author_facet | Wang, Xinhong Li, Lulu Ma, Xiaojun Su, He Shu, Jing |
author_sort | Wang, Xinhong |
collection | PubMed |
description | Patrinia monandra C. B. Clarke is traditionally used for the treatment of inflammation, typhoid fever, injuries due to falls, abdominal pain, malaria, and acute appendicitis ulcers in China and Korea. In this study, the complete chloroplast genome of P. monandra was sequenced using the Illumina HiSeq X-Ten platform. It had a circular shape and a length of 158,940 bp, with 38.51% GC content. It contained a large single-copy region of 87,641 bp, a small single-copy region of 12,807 bp, and two inverted repeat regions of 29,246 bp. In total, 128 different genes, including 83 protein-coding genes, 37 distinct tRNA genes, and eight rRNA genes, were identified. Maximum-likelihood phylogenomic analysis showed that P. monandra is closely related to Patrinia scabiosifolia and Patrinia villosa in the Valerianaceae family. There were 4535 variable sites, 157,354 conserved sites, and 3085 singleton sites in the six Patrinia chloroplast genomes. |
format | Online Article Text |
id | pubmed-9427040 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-94270402022-08-31 The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb Wang, Xinhong Li, Lulu Ma, Xiaojun Su, He Shu, Jing Mitochondrial DNA B Resour Mitogenome Announcement Patrinia monandra C. B. Clarke is traditionally used for the treatment of inflammation, typhoid fever, injuries due to falls, abdominal pain, malaria, and acute appendicitis ulcers in China and Korea. In this study, the complete chloroplast genome of P. monandra was sequenced using the Illumina HiSeq X-Ten platform. It had a circular shape and a length of 158,940 bp, with 38.51% GC content. It contained a large single-copy region of 87,641 bp, a small single-copy region of 12,807 bp, and two inverted repeat regions of 29,246 bp. In total, 128 different genes, including 83 protein-coding genes, 37 distinct tRNA genes, and eight rRNA genes, were identified. Maximum-likelihood phylogenomic analysis showed that P. monandra is closely related to Patrinia scabiosifolia and Patrinia villosa in the Valerianaceae family. There were 4535 variable sites, 157,354 conserved sites, and 3085 singleton sites in the six Patrinia chloroplast genomes. Taylor & Francis 2022-08-28 /pmc/articles/PMC9427040/ /pubmed/36051369 http://dx.doi.org/10.1080/23802359.2022.2098855 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wang, Xinhong Li, Lulu Ma, Xiaojun Su, He Shu, Jing The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title | The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title_full | The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title_fullStr | The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title_full_unstemmed | The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title_short | The complete chloroplast genome sequence of Patrinia monandra: a traditional Chinese medicinal herb |
title_sort | complete chloroplast genome sequence of patrinia monandra: a traditional chinese medicinal herb |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9427040/ https://www.ncbi.nlm.nih.gov/pubmed/36051369 http://dx.doi.org/10.1080/23802359.2022.2098855 |
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