Cargando…
The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model
We evaluated a multiclass classification model to predict estimated glomerular filtration rate (eGFR) groups in chronic kidney disease (CKD) patients using magnetic resonance imaging (MRI) texture analysis (TA). We identified 166 CKD patients who underwent MRI comprising Dixon-based T1-weighted in-p...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9427930/ https://www.ncbi.nlm.nih.gov/pubmed/36042326 http://dx.doi.org/10.1038/s41598-022-19009-7 |
_version_ | 1784779005059137536 |
---|---|
author | Hara, Yuki Nagawa, Keita Yamamoto, Yuya Inoue, Kaiji Funakoshi, Kazuto Inoue, Tsutomu Okada, Hirokazu Ishikawa, Masahiro Kobayashi, Naoki Kozawa, Eito |
author_facet | Hara, Yuki Nagawa, Keita Yamamoto, Yuya Inoue, Kaiji Funakoshi, Kazuto Inoue, Tsutomu Okada, Hirokazu Ishikawa, Masahiro Kobayashi, Naoki Kozawa, Eito |
author_sort | Hara, Yuki |
collection | PubMed |
description | We evaluated a multiclass classification model to predict estimated glomerular filtration rate (eGFR) groups in chronic kidney disease (CKD) patients using magnetic resonance imaging (MRI) texture analysis (TA). We identified 166 CKD patients who underwent MRI comprising Dixon-based T1-weighted in-phase (IP)/opposed-phase (OP)/water-only (WO) images, apparent diffusion coefficient (ADC) maps, and T2* maps. The patients were divided into severe, moderate, and control groups based on eGFR borderlines of 30 and 60 mL/min/1.73 m(2). After extracting 93 texture features (TFs), dimension reduction was performed using inter-observer reproducibility analysis and sequential feature selection (SFS) algorithm. Models were created using linear discriminant analysis (LDA); support vector machine (SVM) with linear, rbf, and sigmoid kernels; decision tree (DT); and random forest (RF) classifiers, with synthetic minority oversampling technique (SMOTE). Models underwent 100-time repeat nested cross-validation. Overall performances of our classification models were modest, and TA based on T1-weighted IP/OP/WO images provided better performance than those based on ADC and T2* maps. The most favorable result was observed in the T1-weighted WO image using RF classifier and the combination model was derived from all T1-weighted images using SVM classifier with rbf kernel. Among the selected TFs, total energy and energy had weak correlations with eGFR. |
format | Online Article Text |
id | pubmed-9427930 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-94279302022-09-01 The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model Hara, Yuki Nagawa, Keita Yamamoto, Yuya Inoue, Kaiji Funakoshi, Kazuto Inoue, Tsutomu Okada, Hirokazu Ishikawa, Masahiro Kobayashi, Naoki Kozawa, Eito Sci Rep Article We evaluated a multiclass classification model to predict estimated glomerular filtration rate (eGFR) groups in chronic kidney disease (CKD) patients using magnetic resonance imaging (MRI) texture analysis (TA). We identified 166 CKD patients who underwent MRI comprising Dixon-based T1-weighted in-phase (IP)/opposed-phase (OP)/water-only (WO) images, apparent diffusion coefficient (ADC) maps, and T2* maps. The patients were divided into severe, moderate, and control groups based on eGFR borderlines of 30 and 60 mL/min/1.73 m(2). After extracting 93 texture features (TFs), dimension reduction was performed using inter-observer reproducibility analysis and sequential feature selection (SFS) algorithm. Models were created using linear discriminant analysis (LDA); support vector machine (SVM) with linear, rbf, and sigmoid kernels; decision tree (DT); and random forest (RF) classifiers, with synthetic minority oversampling technique (SMOTE). Models underwent 100-time repeat nested cross-validation. Overall performances of our classification models were modest, and TA based on T1-weighted IP/OP/WO images provided better performance than those based on ADC and T2* maps. The most favorable result was observed in the T1-weighted WO image using RF classifier and the combination model was derived from all T1-weighted images using SVM classifier with rbf kernel. Among the selected TFs, total energy and energy had weak correlations with eGFR. Nature Publishing Group UK 2022-08-30 /pmc/articles/PMC9427930/ /pubmed/36042326 http://dx.doi.org/10.1038/s41598-022-19009-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hara, Yuki Nagawa, Keita Yamamoto, Yuya Inoue, Kaiji Funakoshi, Kazuto Inoue, Tsutomu Okada, Hirokazu Ishikawa, Masahiro Kobayashi, Naoki Kozawa, Eito The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title | The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title_full | The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title_fullStr | The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title_full_unstemmed | The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title_short | The utility of texture analysis of kidney MRI for evaluating renal dysfunction with multiclass classification model |
title_sort | utility of texture analysis of kidney mri for evaluating renal dysfunction with multiclass classification model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9427930/ https://www.ncbi.nlm.nih.gov/pubmed/36042326 http://dx.doi.org/10.1038/s41598-022-19009-7 |
work_keys_str_mv | AT harayuki theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT nagawakeita theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT yamamotoyuya theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT inouekaiji theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT funakoshikazuto theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT inouetsutomu theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT okadahirokazu theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT ishikawamasahiro theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT kobayashinaoki theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT kozawaeito theutilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT harayuki utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT nagawakeita utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT yamamotoyuya utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT inouekaiji utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT funakoshikazuto utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT inouetsutomu utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT okadahirokazu utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT ishikawamasahiro utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT kobayashinaoki utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel AT kozawaeito utilityoftextureanalysisofkidneymriforevaluatingrenaldysfunctionwithmulticlassclassificationmodel |