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Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs

Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2...

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Detalles Bibliográficos
Autores principales: Tang, Shan, Wu, Xue, Liu, Jinghui, Zhang, Qiongsi, Wang, Xinyi, Shao, Shuai, Gokbag, Birkan, Fan, Kunjie, Liu, Xiaoqi, Li, Fuhai, Cheng, Lijun, Li, Lang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9428847/
https://www.ncbi.nlm.nih.gov/pubmed/36060092
http://dx.doi.org/10.1016/j.xpro.2022.101556
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author Tang, Shan
Wu, Xue
Liu, Jinghui
Zhang, Qiongsi
Wang, Xinyi
Shao, Shuai
Gokbag, Birkan
Fan, Kunjie
Liu, Xiaoqi
Li, Fuhai
Cheng, Lijun
Li, Lang
author_facet Tang, Shan
Wu, Xue
Liu, Jinghui
Zhang, Qiongsi
Wang, Xinyi
Shao, Shuai
Gokbag, Birkan
Fan, Kunjie
Liu, Xiaoqi
Li, Fuhai
Cheng, Lijun
Li, Lang
author_sort Tang, Shan
collection PubMed
description Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2-Cas9 cells followed by sequencing and data analysis. By introducing two backbones, we optimized the library construction process, facilitated standard pair-end sequencing, and provided options of screening on cells with or without modification of Cas9 expression.
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spelling pubmed-94288472022-09-01 Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs Tang, Shan Wu, Xue Liu, Jinghui Zhang, Qiongsi Wang, Xinyi Shao, Shuai Gokbag, Birkan Fan, Kunjie Liu, Xiaoqi Li, Fuhai Cheng, Lijun Li, Lang STAR Protoc Protocol Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2-Cas9 cells followed by sequencing and data analysis. By introducing two backbones, we optimized the library construction process, facilitated standard pair-end sequencing, and provided options of screening on cells with or without modification of Cas9 expression. Elsevier 2022-08-24 /pmc/articles/PMC9428847/ /pubmed/36060092 http://dx.doi.org/10.1016/j.xpro.2022.101556 Text en © 2022 The Authors. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Tang, Shan
Wu, Xue
Liu, Jinghui
Zhang, Qiongsi
Wang, Xinyi
Shao, Shuai
Gokbag, Birkan
Fan, Kunjie
Liu, Xiaoqi
Li, Fuhai
Cheng, Lijun
Li, Lang
Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title_full Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title_fullStr Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title_full_unstemmed Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title_short Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
title_sort generation of dual-grna library for combinatorial crispr screening of synthetic lethal gene pairs
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9428847/
https://www.ncbi.nlm.nih.gov/pubmed/36060092
http://dx.doi.org/10.1016/j.xpro.2022.101556
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