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Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs
Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9428847/ https://www.ncbi.nlm.nih.gov/pubmed/36060092 http://dx.doi.org/10.1016/j.xpro.2022.101556 |
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author | Tang, Shan Wu, Xue Liu, Jinghui Zhang, Qiongsi Wang, Xinyi Shao, Shuai Gokbag, Birkan Fan, Kunjie Liu, Xiaoqi Li, Fuhai Cheng, Lijun Li, Lang |
author_facet | Tang, Shan Wu, Xue Liu, Jinghui Zhang, Qiongsi Wang, Xinyi Shao, Shuai Gokbag, Birkan Fan, Kunjie Liu, Xiaoqi Li, Fuhai Cheng, Lijun Li, Lang |
author_sort | Tang, Shan |
collection | PubMed |
description | Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2-Cas9 cells followed by sequencing and data analysis. By introducing two backbones, we optimized the library construction process, facilitated standard pair-end sequencing, and provided options of screening on cells with or without modification of Cas9 expression. |
format | Online Article Text |
id | pubmed-9428847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-94288472022-09-01 Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs Tang, Shan Wu, Xue Liu, Jinghui Zhang, Qiongsi Wang, Xinyi Shao, Shuai Gokbag, Birkan Fan, Kunjie Liu, Xiaoqi Li, Fuhai Cheng, Lijun Li, Lang STAR Protoc Protocol Combinatorial CRISPR screening is useful for investigating synthetic lethality (SL) gene pairs. Here, we detail the steps for dual-gRNA library construction, with the introduction of two backbones, LentiGuide_DKO and LentiCRISPR_DKO. We describe steps for in vitro screening with 22Rv1-Cas9 and SaOS2-Cas9 cells followed by sequencing and data analysis. By introducing two backbones, we optimized the library construction process, facilitated standard pair-end sequencing, and provided options of screening on cells with or without modification of Cas9 expression. Elsevier 2022-08-24 /pmc/articles/PMC9428847/ /pubmed/36060092 http://dx.doi.org/10.1016/j.xpro.2022.101556 Text en © 2022 The Authors. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Tang, Shan Wu, Xue Liu, Jinghui Zhang, Qiongsi Wang, Xinyi Shao, Shuai Gokbag, Birkan Fan, Kunjie Liu, Xiaoqi Li, Fuhai Cheng, Lijun Li, Lang Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title | Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title_full | Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title_fullStr | Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title_full_unstemmed | Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title_short | Generation of dual-gRNA library for combinatorial CRISPR screening of synthetic lethal gene pairs |
title_sort | generation of dual-grna library for combinatorial crispr screening of synthetic lethal gene pairs |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9428847/ https://www.ncbi.nlm.nih.gov/pubmed/36060092 http://dx.doi.org/10.1016/j.xpro.2022.101556 |
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