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Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation t...

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Autores principales: Ji, Yanzhu, Feng, Shaohong, Wu, Lei, Fang, Qi, Brüniche-Olsen, Anna, DeWoody, J. Andrew, Cheng, Yalin, Zhang, Dezhi, Hao, Yan, Song, Gang, Qu, Yanhua, Suh, Alexander, Zhang, Guojie, Hackett, Shannon J., Lei, Fumin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9432842/
https://www.ncbi.nlm.nih.gov/pubmed/36044583
http://dx.doi.org/10.1126/sciadv.abo0099
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author Ji, Yanzhu
Feng, Shaohong
Wu, Lei
Fang, Qi
Brüniche-Olsen, Anna
DeWoody, J. Andrew
Cheng, Yalin
Zhang, Dezhi
Hao, Yan
Song, Gang
Qu, Yanhua
Suh, Alexander
Zhang, Guojie
Hackett, Shannon J.
Lei, Fumin
author_facet Ji, Yanzhu
Feng, Shaohong
Wu, Lei
Fang, Qi
Brüniche-Olsen, Anna
DeWoody, J. Andrew
Cheng, Yalin
Zhang, Dezhi
Hao, Yan
Song, Gang
Qu, Yanhua
Suh, Alexander
Zhang, Guojie
Hackett, Shannon J.
Lei, Fumin
author_sort Ji, Yanzhu
collection PubMed
description The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds.
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spelling pubmed-94328422022-09-13 Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds Ji, Yanzhu Feng, Shaohong Wu, Lei Fang, Qi Brüniche-Olsen, Anna DeWoody, J. Andrew Cheng, Yalin Zhang, Dezhi Hao, Yan Song, Gang Qu, Yanhua Suh, Alexander Zhang, Guojie Hackett, Shannon J. Lei, Fumin Sci Adv Earth, Environmental, Ecological, and Space Sciences The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds. American Association for the Advancement of Science 2022-08-31 /pmc/articles/PMC9432842/ /pubmed/36044583 http://dx.doi.org/10.1126/sciadv.abo0099 Text en Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Earth, Environmental, Ecological, and Space Sciences
Ji, Yanzhu
Feng, Shaohong
Wu, Lei
Fang, Qi
Brüniche-Olsen, Anna
DeWoody, J. Andrew
Cheng, Yalin
Zhang, Dezhi
Hao, Yan
Song, Gang
Qu, Yanhua
Suh, Alexander
Zhang, Guojie
Hackett, Shannon J.
Lei, Fumin
Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title_full Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title_fullStr Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title_full_unstemmed Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title_short Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds
title_sort orthologous microsatellites, transposable elements, and dna deletions correlate with generation time and body mass in neoavian birds
topic Earth, Environmental, Ecological, and Space Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9432842/
https://www.ncbi.nlm.nih.gov/pubmed/36044583
http://dx.doi.org/10.1126/sciadv.abo0099
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