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Environment-specificity and universality of the microbial growth law

As the nutrient quality changes, the fractions of ribosomal proteins in the proteome are usually positively correlated with the growth rates due to the auto-catalytic nature of ribosomes. While this growth law is observed across multiple organisms, the relation between the ribosome fraction and grow...

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Autores principales: Wang, Qirun, Lin, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9433384/
https://www.ncbi.nlm.nih.gov/pubmed/36045217
http://dx.doi.org/10.1038/s42003-022-03815-w
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author Wang, Qirun
Lin, Jie
author_facet Wang, Qirun
Lin, Jie
author_sort Wang, Qirun
collection PubMed
description As the nutrient quality changes, the fractions of ribosomal proteins in the proteome are usually positively correlated with the growth rates due to the auto-catalytic nature of ribosomes. While this growth law is observed across multiple organisms, the relation between the ribosome fraction and growth rate is often more complex than linear, beyond models assuming a constant translation speed. Here, we propose a general framework of protein synthesis considering heterogeneous translation speeds and protein degradations. We demonstrate that the growth law curves are generally environment-specific, e.g., depending on the correlation between the translation speeds and ribosome allocations among proteins. Our predictions of ribosome fractions agree quantitatively with data of Saccharomyces cerevisiae. Interestingly, we find that the growth law curve of Escherichia coli nevertheless appears universal, which we prove must exhibit an upward bending in slow-growth conditions, in agreement with experiments. Our work provides insights on the connection between the heterogeneity among genes and the environment-specificity of cell behaviors.
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spelling pubmed-94333842022-09-02 Environment-specificity and universality of the microbial growth law Wang, Qirun Lin, Jie Commun Biol Article As the nutrient quality changes, the fractions of ribosomal proteins in the proteome are usually positively correlated with the growth rates due to the auto-catalytic nature of ribosomes. While this growth law is observed across multiple organisms, the relation between the ribosome fraction and growth rate is often more complex than linear, beyond models assuming a constant translation speed. Here, we propose a general framework of protein synthesis considering heterogeneous translation speeds and protein degradations. We demonstrate that the growth law curves are generally environment-specific, e.g., depending on the correlation between the translation speeds and ribosome allocations among proteins. Our predictions of ribosome fractions agree quantitatively with data of Saccharomyces cerevisiae. Interestingly, we find that the growth law curve of Escherichia coli nevertheless appears universal, which we prove must exhibit an upward bending in slow-growth conditions, in agreement with experiments. Our work provides insights on the connection between the heterogeneity among genes and the environment-specificity of cell behaviors. Nature Publishing Group UK 2022-08-31 /pmc/articles/PMC9433384/ /pubmed/36045217 http://dx.doi.org/10.1038/s42003-022-03815-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Qirun
Lin, Jie
Environment-specificity and universality of the microbial growth law
title Environment-specificity and universality of the microbial growth law
title_full Environment-specificity and universality of the microbial growth law
title_fullStr Environment-specificity and universality of the microbial growth law
title_full_unstemmed Environment-specificity and universality of the microbial growth law
title_short Environment-specificity and universality of the microbial growth law
title_sort environment-specificity and universality of the microbial growth law
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9433384/
https://www.ncbi.nlm.nih.gov/pubmed/36045217
http://dx.doi.org/10.1038/s42003-022-03815-w
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