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A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear

Refractive errors, particularly myopia, are the most common eye conditions, often leading to serious visual impairment. The age of onset is correlated with the severity of refractive error in adulthood observed in epidemiological and genetic studies and can be used as a proxy in refractive error gen...

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Autores principales: Patasova, Karina, Khawaja, Anthony P, Wojciechowski, Robert, Mahroo, Omar A, Falchi, Mario, Rahi, Jugnoo S, Hammond, Chris J, Hysi, Pirro G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9433727/
https://www.ncbi.nlm.nih.gov/pubmed/35220419
http://dx.doi.org/10.1093/hmg/ddac048
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author Patasova, Karina
Khawaja, Anthony P
Wojciechowski, Robert
Mahroo, Omar A
Falchi, Mario
Rahi, Jugnoo S
Hammond, Chris J
Hysi, Pirro G
author_facet Patasova, Karina
Khawaja, Anthony P
Wojciechowski, Robert
Mahroo, Omar A
Falchi, Mario
Rahi, Jugnoo S
Hammond, Chris J
Hysi, Pirro G
author_sort Patasova, Karina
collection PubMed
description Refractive errors, particularly myopia, are the most common eye conditions, often leading to serious visual impairment. The age of onset is correlated with the severity of refractive error in adulthood observed in epidemiological and genetic studies and can be used as a proxy in refractive error genetic studies. To further elucidate genetic factors that influence refractive error, we analysed self-reported age of refractive error correction data from the UK Biobank European and perform genome-wide time-to-event analyses on the age of first spectacle wear (AFSW). Genome-wide proportional hazards ratio analyses were conducted in 340 318 European subjects. We subsequently assessed the similarities and differences in the genetic architectures of refractive error correction from different causes. All-cause AFSW was genetically strongly correlated (r(g) = −0.68) with spherical equivalent (the measured strength of spectacle lens required to correct the refractive error) and was used as a proxy for refractive error. Time-to-event analyses found genome-wide significant associations at 44 independent genomic loci, many of which (GJD2, LAMA2, etc.) were previously associated with refractive error. We also identified six novel regions associated with AFSW, the most significant of which was on chromosome 17q (P = 3.06 × 10(−09) for rs55882072), replicating in an independent dataset. We found that genes associated with AFSW were significantly enriched for expression in central nervous system tissues and were involved in neurogenesis. This work demonstrates the merits of time-to-event study design in the genetic investigation of refractive error and contributes additional knowledge on its genetic risk factors in the general population.
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spelling pubmed-94337272022-09-01 A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear Patasova, Karina Khawaja, Anthony P Wojciechowski, Robert Mahroo, Omar A Falchi, Mario Rahi, Jugnoo S Hammond, Chris J Hysi, Pirro G Hum Mol Genet Association Studies Article Refractive errors, particularly myopia, are the most common eye conditions, often leading to serious visual impairment. The age of onset is correlated with the severity of refractive error in adulthood observed in epidemiological and genetic studies and can be used as a proxy in refractive error genetic studies. To further elucidate genetic factors that influence refractive error, we analysed self-reported age of refractive error correction data from the UK Biobank European and perform genome-wide time-to-event analyses on the age of first spectacle wear (AFSW). Genome-wide proportional hazards ratio analyses were conducted in 340 318 European subjects. We subsequently assessed the similarities and differences in the genetic architectures of refractive error correction from different causes. All-cause AFSW was genetically strongly correlated (r(g) = −0.68) with spherical equivalent (the measured strength of spectacle lens required to correct the refractive error) and was used as a proxy for refractive error. Time-to-event analyses found genome-wide significant associations at 44 independent genomic loci, many of which (GJD2, LAMA2, etc.) were previously associated with refractive error. We also identified six novel regions associated with AFSW, the most significant of which was on chromosome 17q (P = 3.06 × 10(−09) for rs55882072), replicating in an independent dataset. We found that genes associated with AFSW were significantly enriched for expression in central nervous system tissues and were involved in neurogenesis. This work demonstrates the merits of time-to-event study design in the genetic investigation of refractive error and contributes additional knowledge on its genetic risk factors in the general population. Oxford University Press 2022-02-26 /pmc/articles/PMC9433727/ /pubmed/35220419 http://dx.doi.org/10.1093/hmg/ddac048 Text en © The Author(s) 2022. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Association Studies Article
Patasova, Karina
Khawaja, Anthony P
Wojciechowski, Robert
Mahroo, Omar A
Falchi, Mario
Rahi, Jugnoo S
Hammond, Chris J
Hysi, Pirro G
A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title_full A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title_fullStr A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title_full_unstemmed A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title_short A genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
title_sort genome-wide analysis of 340 318 participants identifies four novel loci associated with the age of first spectacle wear
topic Association Studies Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9433727/
https://www.ncbi.nlm.nih.gov/pubmed/35220419
http://dx.doi.org/10.1093/hmg/ddac048
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