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Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434602/ https://www.ncbi.nlm.nih.gov/pubmed/36047395 http://dx.doi.org/10.1107/S2053273322007483 |
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author | Özer, Berrak Karlsen, Martin A. Thatcher, Zachary Lan, Ling McMahon, Brian Strickland, Peter R. Westrip, Simon P. Sang, Koh S. Billing, David G. Ravnsbæk, Dorthe B. Billinge, Simon J. L. |
author_facet | Özer, Berrak Karlsen, Martin A. Thatcher, Zachary Lan, Ling McMahon, Brian Strickland, Peter R. Westrip, Simon P. Sang, Koh S. Billing, David G. Ravnsbæk, Dorthe B. Billinge, Simon J. L. |
author_sort | Özer, Berrak |
collection | PubMed |
description | A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges. |
format | Online Article Text |
id | pubmed-9434602 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-94346022022-09-19 Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern Özer, Berrak Karlsen, Martin A. Thatcher, Zachary Lan, Ling McMahon, Brian Strickland, Peter R. Westrip, Simon P. Sang, Koh S. Billing, David G. Ravnsbæk, Dorthe B. Billinge, Simon J. L. Acta Crystallogr A Found Adv Research Papers A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges. International Union of Crystallography 2022-08-19 /pmc/articles/PMC9434602/ /pubmed/36047395 http://dx.doi.org/10.1107/S2053273322007483 Text en © Berrak Özer et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Özer, Berrak Karlsen, Martin A. Thatcher, Zachary Lan, Ling McMahon, Brian Strickland, Peter R. Westrip, Simon P. Sang, Koh S. Billing, David G. Ravnsbæk, Dorthe B. Billinge, Simon J. L. Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title | Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title_full | Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title_fullStr | Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title_full_unstemmed | Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title_short | Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
title_sort | towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434602/ https://www.ncbi.nlm.nih.gov/pubmed/36047395 http://dx.doi.org/10.1107/S2053273322007483 |
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