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Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern

A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together...

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Autores principales: Özer, Berrak, Karlsen, Martin A., Thatcher, Zachary, Lan, Ling, McMahon, Brian, Strickland, Peter R., Westrip, Simon P., Sang, Koh S., Billing, David G., Ravnsbæk, Dorthe B., Billinge, Simon J. L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434602/
https://www.ncbi.nlm.nih.gov/pubmed/36047395
http://dx.doi.org/10.1107/S2053273322007483
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author Özer, Berrak
Karlsen, Martin A.
Thatcher, Zachary
Lan, Ling
McMahon, Brian
Strickland, Peter R.
Westrip, Simon P.
Sang, Koh S.
Billing, David G.
Ravnsbæk, Dorthe B.
Billinge, Simon J. L.
author_facet Özer, Berrak
Karlsen, Martin A.
Thatcher, Zachary
Lan, Ling
McMahon, Brian
Strickland, Peter R.
Westrip, Simon P.
Sang, Koh S.
Billing, David G.
Ravnsbæk, Dorthe B.
Billinge, Simon J. L.
author_sort Özer, Berrak
collection PubMed
description A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges.
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spelling pubmed-94346022022-09-19 Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern Özer, Berrak Karlsen, Martin A. Thatcher, Zachary Lan, Ling McMahon, Brian Strickland, Peter R. Westrip, Simon P. Sang, Koh S. Billing, David G. Ravnsbæk, Dorthe B. Billinge, Simon J. L. Acta Crystallogr A Found Adv Research Papers A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges. International Union of Crystallography 2022-08-19 /pmc/articles/PMC9434602/ /pubmed/36047395 http://dx.doi.org/10.1107/S2053273322007483 Text en © Berrak Özer et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Özer, Berrak
Karlsen, Martin A.
Thatcher, Zachary
Lan, Ling
McMahon, Brian
Strickland, Peter R.
Westrip, Simon P.
Sang, Koh S.
Billing, David G.
Ravnsbæk, Dorthe B.
Billinge, Simon J. L.
Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title_full Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title_fullStr Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title_full_unstemmed Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title_short Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
title_sort towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434602/
https://www.ncbi.nlm.nih.gov/pubmed/36047395
http://dx.doi.org/10.1107/S2053273322007483
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