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Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method
An indicator-based crystallographic phase retrieval method has been developed for diffraction data of bicontinuous cubic phases of lyotropic liquid crystals. Such liquid crystals have large structural disorder; the number of independent Bragg reflections that can be observed is limited. This paper p...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434603/ https://www.ncbi.nlm.nih.gov/pubmed/36047400 http://dx.doi.org/10.1107/S2053273322006970 |
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author | Oka, Toshihiko |
author_facet | Oka, Toshihiko |
author_sort | Oka, Toshihiko |
collection | PubMed |
description | An indicator-based crystallographic phase retrieval method has been developed for diffraction data of bicontinuous cubic phases of lyotropic liquid crystals. Such liquid crystals have large structural disorder; the number of independent Bragg reflections that can be observed is limited. This paper proposes two indicators to identify plausible combination(s) of crystallographic phases, i.e. electron-density distribution. The indicators are based on the characteristics of the liquid crystals: amphiphilic molecules diffuse mainly in the direction parallel to polar–nonpolar interfaces and the electron density in the direction parallel to the interfaces is averaged. One indicator is the difference between the maximum and minimum electron density, and the other is calculated from the Hessian matrix of the electron density. Using test data, the electron densities were calculated for all possible phase combinations and indicators were obtained. The results indicated that the electron densities with the minimum indicators were close to the true electron density. Therefore, this method is effective for phase retrieval. The accuracy of the phase retrieval decreased when the volume fraction of the region including the triply periodic minimal surface increased. |
format | Online Article Text |
id | pubmed-9434603 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-94346032022-09-19 Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method Oka, Toshihiko Acta Crystallogr A Found Adv Research Papers An indicator-based crystallographic phase retrieval method has been developed for diffraction data of bicontinuous cubic phases of lyotropic liquid crystals. Such liquid crystals have large structural disorder; the number of independent Bragg reflections that can be observed is limited. This paper proposes two indicators to identify plausible combination(s) of crystallographic phases, i.e. electron-density distribution. The indicators are based on the characteristics of the liquid crystals: amphiphilic molecules diffuse mainly in the direction parallel to polar–nonpolar interfaces and the electron density in the direction parallel to the interfaces is averaged. One indicator is the difference between the maximum and minimum electron density, and the other is calculated from the Hessian matrix of the electron density. Using test data, the electron densities were calculated for all possible phase combinations and indicators were obtained. The results indicated that the electron densities with the minimum indicators were close to the true electron density. Therefore, this method is effective for phase retrieval. The accuracy of the phase retrieval decreased when the volume fraction of the region including the triply periodic minimal surface increased. International Union of Crystallography 2022-07-28 /pmc/articles/PMC9434603/ /pubmed/36047400 http://dx.doi.org/10.1107/S2053273322006970 Text en © Toshihiko Oka 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Oka, Toshihiko Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title | Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title_full | Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title_fullStr | Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title_full_unstemmed | Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title_short | Crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
title_sort | crystallographic phase retrieval method for liquid crystal bicontinuous phases: indicator-based method |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9434603/ https://www.ncbi.nlm.nih.gov/pubmed/36047400 http://dx.doi.org/10.1107/S2053273322006970 |
work_keys_str_mv | AT okatoshihiko crystallographicphaseretrievalmethodforliquidcrystalbicontinuousphasesindicatorbasedmethod |