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Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior

Breast cancer remains the most prevalent malignancy in women in many countries around the world, thus calling for better imaging technologies to improve screening and diagnosis. Grating interferometry (GI)-based phase contrast X-ray CT is a promising technique which could make the transition to clin...

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Autores principales: van Gogh, Stefano, Mukherjee, Subhadip, Xu, Jinqiu, Wang, Zhentian, Rawlik, Michał, Varga, Zsuzsanna, Alaifari, Rima, Schönlieb, Carola-Bibiane, Stampanoni, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9436132/
https://www.ncbi.nlm.nih.gov/pubmed/36048759
http://dx.doi.org/10.1371/journal.pone.0272963
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author van Gogh, Stefano
Mukherjee, Subhadip
Xu, Jinqiu
Wang, Zhentian
Rawlik, Michał
Varga, Zsuzsanna
Alaifari, Rima
Schönlieb, Carola-Bibiane
Stampanoni, Marco
author_facet van Gogh, Stefano
Mukherjee, Subhadip
Xu, Jinqiu
Wang, Zhentian
Rawlik, Michał
Varga, Zsuzsanna
Alaifari, Rima
Schönlieb, Carola-Bibiane
Stampanoni, Marco
author_sort van Gogh, Stefano
collection PubMed
description Breast cancer remains the most prevalent malignancy in women in many countries around the world, thus calling for better imaging technologies to improve screening and diagnosis. Grating interferometry (GI)-based phase contrast X-ray CT is a promising technique which could make the transition to clinical practice and improve breast cancer diagnosis by combining the high three-dimensional resolution of conventional CT with higher soft-tissue contrast. Unfortunately though, obtaining high-quality images is challenging. Grating fabrication defects and photon starvation lead to high noise amplitudes in the measured data. Moreover, the highly ill-conditioned differential nature of the GI-CT forward operator renders the inversion from corrupted data even more cumbersome. In this paper, we propose a novel regularized iterative reconstruction algorithm with an improved tomographic operator and a powerful data-driven regularizer to tackle this challenging inverse problem. Our algorithm combines the L-BFGS optimization scheme with a data-driven prior parameterized by a deep neural network. Importantly, we propose a novel regularization strategy to ensure that the trained network is non-expansive, which is critical for the convergence and stability analysis we provide. We empirically show that the proposed method achieves high quality images, both on simulated data as well as on real measurements.
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spelling pubmed-94361322022-09-02 Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior van Gogh, Stefano Mukherjee, Subhadip Xu, Jinqiu Wang, Zhentian Rawlik, Michał Varga, Zsuzsanna Alaifari, Rima Schönlieb, Carola-Bibiane Stampanoni, Marco PLoS One Research Article Breast cancer remains the most prevalent malignancy in women in many countries around the world, thus calling for better imaging technologies to improve screening and diagnosis. Grating interferometry (GI)-based phase contrast X-ray CT is a promising technique which could make the transition to clinical practice and improve breast cancer diagnosis by combining the high three-dimensional resolution of conventional CT with higher soft-tissue contrast. Unfortunately though, obtaining high-quality images is challenging. Grating fabrication defects and photon starvation lead to high noise amplitudes in the measured data. Moreover, the highly ill-conditioned differential nature of the GI-CT forward operator renders the inversion from corrupted data even more cumbersome. In this paper, we propose a novel regularized iterative reconstruction algorithm with an improved tomographic operator and a powerful data-driven regularizer to tackle this challenging inverse problem. Our algorithm combines the L-BFGS optimization scheme with a data-driven prior parameterized by a deep neural network. Importantly, we propose a novel regularization strategy to ensure that the trained network is non-expansive, which is critical for the convergence and stability analysis we provide. We empirically show that the proposed method achieves high quality images, both on simulated data as well as on real measurements. Public Library of Science 2022-09-01 /pmc/articles/PMC9436132/ /pubmed/36048759 http://dx.doi.org/10.1371/journal.pone.0272963 Text en © 2022 van Gogh et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
van Gogh, Stefano
Mukherjee, Subhadip
Xu, Jinqiu
Wang, Zhentian
Rawlik, Michał
Varga, Zsuzsanna
Alaifari, Rima
Schönlieb, Carola-Bibiane
Stampanoni, Marco
Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title_full Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title_fullStr Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title_full_unstemmed Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title_short Iterative phase contrast CT reconstruction with novel tomographic operator and data-driven prior
title_sort iterative phase contrast ct reconstruction with novel tomographic operator and data-driven prior
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9436132/
https://www.ncbi.nlm.nih.gov/pubmed/36048759
http://dx.doi.org/10.1371/journal.pone.0272963
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