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Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model

Otomycosis accounts for over 15% of cases of external otitis worldwide. It is common in humid regions and Chinese cultures with ear-cleaning custom. Aspergillus and Candida are the major pathogens causing long-term infection. Early endoscopic and microbiological examinations, performed by otologists...

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Autores principales: Mao, Chenggang, Li, Aimin, Hu, Jing, Wang, Pengjun, Peng, Dan, Wang, Juehui, Sun, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9437247/
https://www.ncbi.nlm.nih.gov/pubmed/36060244
http://dx.doi.org/10.3389/fmolb.2022.951432
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author Mao, Chenggang
Li, Aimin
Hu, Jing
Wang, Pengjun
Peng, Dan
Wang, Juehui
Sun, Yi
author_facet Mao, Chenggang
Li, Aimin
Hu, Jing
Wang, Pengjun
Peng, Dan
Wang, Juehui
Sun, Yi
author_sort Mao, Chenggang
collection PubMed
description Otomycosis accounts for over 15% of cases of external otitis worldwide. It is common in humid regions and Chinese cultures with ear-cleaning custom. Aspergillus and Candida are the major pathogens causing long-term infection. Early endoscopic and microbiological examinations, performed by otologists and microbiologists, respectively, are important for the appropriate medical treatment of otomycosis. The deep-learning model is a novel automatic diagnostic program that provides quick and accurate diagnoses using a large database of images acquired in clinical settings. The aim of the present study was to introduce a machine-learning model to accurately and quickly diagnose otomycosis caused by Aspergillus and Candida. We propose a computer-aided decision-making system based on a deep-learning model comprising two subsystems: Java web application and image classification. The web application subsystem provides a user-friendly webpage to collect consulted images and display the calculation results. The image classification subsystem mainly trained neural network models for end-to-end data inference. The end user uploads a few images obtained with the ear endoscope, and the system returns the classification results to the user in the form of category probability values. To accurately diagnose otomycosis, we used otoendoscopic images and fungal culture secretion. Fungal fluorescence, culture, and DNA sequencing were performed to confirm the pathogens Aspergillus or Candida spp. In addition, impacted cerumen, external otitis, and normal external auditory canal endoscopic images were retained for reference. We merged these four types of images into an otoendoscopic image gallery. To achieve better accuracy and generalization abilities after model-training, we selected 2,182 of approximately 4,000 ear endoscopic images as training samples and 475 as validation samples. After selecting the deep neural network models, we tested the ResNet, SENet, and EfficientNet neural network models with different numbers of layers. Considering the accuracy and operation speed, we finally chose the EfficientNetB6 model, and the probability values of the four categories of otomycosis, impacted cerumen, external otitis, and normal cases were outputted. After multiple model training iterations, the average accuracy of the overall validation sample reached 92.42%. The results suggest that the system could be used as a reference for general practitioners to obtain more accurate diagnoses of otomycosis.
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spelling pubmed-94372472022-09-03 Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model Mao, Chenggang Li, Aimin Hu, Jing Wang, Pengjun Peng, Dan Wang, Juehui Sun, Yi Front Mol Biosci Molecular Biosciences Otomycosis accounts for over 15% of cases of external otitis worldwide. It is common in humid regions and Chinese cultures with ear-cleaning custom. Aspergillus and Candida are the major pathogens causing long-term infection. Early endoscopic and microbiological examinations, performed by otologists and microbiologists, respectively, are important for the appropriate medical treatment of otomycosis. The deep-learning model is a novel automatic diagnostic program that provides quick and accurate diagnoses using a large database of images acquired in clinical settings. The aim of the present study was to introduce a machine-learning model to accurately and quickly diagnose otomycosis caused by Aspergillus and Candida. We propose a computer-aided decision-making system based on a deep-learning model comprising two subsystems: Java web application and image classification. The web application subsystem provides a user-friendly webpage to collect consulted images and display the calculation results. The image classification subsystem mainly trained neural network models for end-to-end data inference. The end user uploads a few images obtained with the ear endoscope, and the system returns the classification results to the user in the form of category probability values. To accurately diagnose otomycosis, we used otoendoscopic images and fungal culture secretion. Fungal fluorescence, culture, and DNA sequencing were performed to confirm the pathogens Aspergillus or Candida spp. In addition, impacted cerumen, external otitis, and normal external auditory canal endoscopic images were retained for reference. We merged these four types of images into an otoendoscopic image gallery. To achieve better accuracy and generalization abilities after model-training, we selected 2,182 of approximately 4,000 ear endoscopic images as training samples and 475 as validation samples. After selecting the deep neural network models, we tested the ResNet, SENet, and EfficientNet neural network models with different numbers of layers. Considering the accuracy and operation speed, we finally chose the EfficientNetB6 model, and the probability values of the four categories of otomycosis, impacted cerumen, external otitis, and normal cases were outputted. After multiple model training iterations, the average accuracy of the overall validation sample reached 92.42%. The results suggest that the system could be used as a reference for general practitioners to obtain more accurate diagnoses of otomycosis. Frontiers Media S.A. 2022-08-19 /pmc/articles/PMC9437247/ /pubmed/36060244 http://dx.doi.org/10.3389/fmolb.2022.951432 Text en Copyright © 2022 Mao, Li, Hu, Wang, Peng, Wang and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Mao, Chenggang
Li, Aimin
Hu, Jing
Wang, Pengjun
Peng, Dan
Wang, Juehui
Sun, Yi
Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title_full Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title_fullStr Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title_full_unstemmed Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title_short Efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
title_sort efficient and accurate diagnosis of otomycosis using an ensemble deep-learning model
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9437247/
https://www.ncbi.nlm.nih.gov/pubmed/36060244
http://dx.doi.org/10.3389/fmolb.2022.951432
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