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Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer

Background: Cancer is the second cause of death worldwide. Copperoptosis is a new mode of regulated cell death and is strongly associated with metabolic pathways. FDX1 is a key gene that promotes copperoptosis, and its impact on tumor pathogenesis and tumor immune response is indistinct and needs fu...

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Autores principales: Xiao, Chen, Yang, Linhui, Jin, Liangzi, Lin, Weiguo, Zhang, Faqin, Huang, Shixin, Huang, Zhijian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9437317/
https://www.ncbi.nlm.nih.gov/pubmed/36061184
http://dx.doi.org/10.3389/fgene.2022.962028
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author Xiao, Chen
Yang, Linhui
Jin, Liangzi
Lin, Weiguo
Zhang, Faqin
Huang, Shixin
Huang, Zhijian
author_facet Xiao, Chen
Yang, Linhui
Jin, Liangzi
Lin, Weiguo
Zhang, Faqin
Huang, Shixin
Huang, Zhijian
author_sort Xiao, Chen
collection PubMed
description Background: Cancer is the second cause of death worldwide. Copperoptosis is a new mode of regulated cell death and is strongly associated with metabolic pathways. FDX1 is a key gene that promotes copperoptosis, and its impact on tumor pathogenesis and tumor immune response is indistinct and needs further exploration. Methods: Data was mined from the Cancer Genome Atlas database, the Broad Institute Cancer Cell Line Encyclopedia database, and the International Cancer Genome Consortium. Survival analyses included the Kaplan–Meier method for calculating the cumulative incidence of survival events and the log-rank method for comparing survival curves between groups. Immune cell infiltration levels were calculated using the Spearman correlation test and correlated with FDX1 expression to assess significance. More correlation analyses between FDX1 expression and mutational markers, such as tumor mutational burden (TMB) and microsatellite instability (MSI), were also examined via Spearman assay to explore the relation between FDX1 expression and the sensitivity of common antitumor drugs. Results: FDX1 expression was downregulated in most kinds of cancers, and this high expression indicated better overall survival and death-specific survival. For several cancer types, FDX1 expression had a positive correlation with immune cell infiltration, and FDX1 also had a positive correlation with TMB and MSI in some cancer types, linking its expression to the assessment of possible treatment responses. Conclusion: The correlations between FDX1 expression and cancer in varioustissues, including clear links to cancer survival and prognosis, make FDX1 aninteresting biomarker and potential therapeutic target for cancer surveillance and futureresearch.
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spelling pubmed-94373172022-09-03 Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer Xiao, Chen Yang, Linhui Jin, Liangzi Lin, Weiguo Zhang, Faqin Huang, Shixin Huang, Zhijian Front Genet Genetics Background: Cancer is the second cause of death worldwide. Copperoptosis is a new mode of regulated cell death and is strongly associated with metabolic pathways. FDX1 is a key gene that promotes copperoptosis, and its impact on tumor pathogenesis and tumor immune response is indistinct and needs further exploration. Methods: Data was mined from the Cancer Genome Atlas database, the Broad Institute Cancer Cell Line Encyclopedia database, and the International Cancer Genome Consortium. Survival analyses included the Kaplan–Meier method for calculating the cumulative incidence of survival events and the log-rank method for comparing survival curves between groups. Immune cell infiltration levels were calculated using the Spearman correlation test and correlated with FDX1 expression to assess significance. More correlation analyses between FDX1 expression and mutational markers, such as tumor mutational burden (TMB) and microsatellite instability (MSI), were also examined via Spearman assay to explore the relation between FDX1 expression and the sensitivity of common antitumor drugs. Results: FDX1 expression was downregulated in most kinds of cancers, and this high expression indicated better overall survival and death-specific survival. For several cancer types, FDX1 expression had a positive correlation with immune cell infiltration, and FDX1 also had a positive correlation with TMB and MSI in some cancer types, linking its expression to the assessment of possible treatment responses. Conclusion: The correlations between FDX1 expression and cancer in varioustissues, including clear links to cancer survival and prognosis, make FDX1 aninteresting biomarker and potential therapeutic target for cancer surveillance and futureresearch. Frontiers Media S.A. 2022-08-19 /pmc/articles/PMC9437317/ /pubmed/36061184 http://dx.doi.org/10.3389/fgene.2022.962028 Text en Copyright © 2022 Xiao, Yang, Jin, Lin, Zhang, Huang and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Xiao, Chen
Yang, Linhui
Jin, Liangzi
Lin, Weiguo
Zhang, Faqin
Huang, Shixin
Huang, Zhijian
Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title_full Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title_fullStr Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title_full_unstemmed Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title_short Prognostic and immunological role of cuproptosis-related protein FDX1 in pan-cancer
title_sort prognostic and immunological role of cuproptosis-related protein fdx1 in pan-cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9437317/
https://www.ncbi.nlm.nih.gov/pubmed/36061184
http://dx.doi.org/10.3389/fgene.2022.962028
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